Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1500
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0497 - 19712646-19712750,19713242-19713344,19713767-197138...    29   2.6  
10_07_0015 + 11813465-11813479,11814342-11814422,11814842-118149...    29   3.4  
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644...    28   5.9  
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653...    27   7.8  

>12_02_0497 -
           19712646-19712750,19713242-19713344,19713767-19713817,
           19713922-19713958,19714244-19714491,19715052-19715098
          Length = 196

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 288 FSVHYILFSDVLLSYLSVKLQWICSPIV 371
           F++HY LFSD++    + K + +C P+V
Sbjct: 149 FTLHYTLFSDIVQLARACKERLLCRPLV 176


>10_07_0015 +
           11813465-11813479,11814342-11814422,11814842-11814951,
           11815553-11815608,11816086-11816180,11817021-11817126,
           11817261-11817577,11817666-11817848,11817976-11818173,
           11819029-11819346,11819721-11819813
          Length = 523

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 346 SFTLR*LNRTSENSM**TLNKNQFLTCRSNHTIQV 242
           S TLR L R    S+  +++  QF TC S+H +QV
Sbjct: 61  SMTLRYLIRNPFQSLLFSMSSKQFPTCLSSHPLQV 95


>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
            6448164-6448243,6449045-6449129,6449221-6449312,
            6449388-6449456,6449544-6449580,6449662-6449744,
            6450427-6450873,6450978-6451014,6451101-6451158,
            6451243-6451382,6451610-6451675,6451794-6451908,
            6453261-6453299,6453482-6453543
          Length = 1927

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 411  QSCSIQNLFDSEIVQSESKSTEALH--SGNLTEHLK 310
            Q+ +  NL+ S + Q++  ++E LH  S NL E+ K
Sbjct: 1337 QTATTSNLYSSNLCQNQKANSEVLHGVSSNLIENSK 1372


>03_02_0221 +
           6533643-6533687,6533860-6533955,6535323-6535682,
           6537106-6537177,6537374-6537697
          Length = 298

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = -3

Query: 516 YKFSHLPTARSVSRTYRLSNGKSIQYYSTLFVRLIQSCSIQNLFDSEIVQSESKSTEALH 337
           + F   P+A   S   +  +  + QYY  +FV++I+ C ++     E       S+ +  
Sbjct: 10  FSFLEWPSATFASSFIKTQSSLA-QYYLLMFVKIIELCKLKG---KETRAEPEVSSVSKA 65

Query: 336 SGNLTEHL 313
           SG  +EH+
Sbjct: 66  SGGSSEHI 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,379,403
Number of Sequences: 37544
Number of extensions: 217348
Number of successful extensions: 442
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)