Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1500
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_48645| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.17)          29   2.6  
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 43/156 (27%), Positives = 71/156 (45%)
 Frame = -3

Query: 477 RTYRLSNGKSIQYYSTLFVRLIQSCSIQNLFDSEIVQSESKSTEALHSGNLTEHLKTVCN 298
           R+YRL++ +SIQ  + L ++LIQ CS++      I + E     A + G + E   +V N
Sbjct: 539 RSYRLNDEESIQMVTALVLQLIQ-CSVK------IPEKEEVEENAANDGQVQE--TSVQN 589

Query: 297 EH*IKINF*RVGRIILSKSRHEEYRIANHIVAYLLSRSLKQNKTESDNSFAILTKILLED 118
                        I++  S     R A + ++  L++     K E D  +  L +  L+D
Sbjct: 590 NK----------DIMICNSYENALRTAQNFISMFLNKCSSVGKDEED--YRPLFENFLQD 637

Query: 117 LLNMLSLPEWCGTETIIRQFAMNLVMTVTNDKQAVS 10
           LL  L+ PEW   E ++      L++T  N    VS
Sbjct: 638 LLLTLNKPEWPAAEVLLTLLGKLLIVTFNNKSVDVS 673


>SB_48645| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.17)
          Length = 373

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 342 LHSGNLTEHLKTVCNEH*IKINF 274
           LH G L EH+K  C++H + ++F
Sbjct: 102 LHRGRLMEHVKEHCSQHDVVVDF 124


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 387 ISFEWSMTELNVQIGLNSIVWIYR*RVYRSLRP 485
           + F+W+   +N+  G + + W+YR   Y   +P
Sbjct: 209 MQFDWNTFSVNLTAGYHQLKWVYRKSCYSFPKP 241


>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -1

Query: 536 FIIEESLTNFLTCPLLVRSQGPIDSLTVNPYNTI-QPYLYV*FSHAPFKTYSTQKLYNRR 360
           F +  S+T F    L+  S  P+   T+ PYNTI   YL     +A    +S    Y  R
Sbjct: 494 FELLRSVTQFCGLLLMRLSDSPLIPFTLTPYNTIVNRYLASLQLNAEVSAHSIDLQYLER 553

Query: 359 A 357
           A
Sbjct: 554 A 554


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,431,561
Number of Sequences: 59808
Number of extensions: 289252
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)