Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1500
         (563 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipp...    34   0.15 
AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,...    34   0.15 
AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,...    34   0.15 

>AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipped-B
            protein.
          Length = 2077

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
 Frame = -3

Query: 522  ITYKFSHLPTARSVSRTYRLSN-GKSIQYYSTLFVRLIQSCSIQNLFDSEIVQSESKSTE 346
            I      LP+++   R Y+L+N G +IQ  + L ++LIQ  +I  L DS  +    K + 
Sbjct: 747  ILTSIDRLPSSKKNLRPYKLTNNGGNIQMVTALVLQLIQCATI--LPDS--LCDNGKFSN 802

Query: 345  ALHSGNLTEHLKTVCNEH*IKINF*RVGRIILSKSRHEEYRIANHIVAYLLSRSLKQNKT 166
                GN  +       E   K+       ++L K     Y +A  I    L+  L + K+
Sbjct: 803  KPQEGNTFD-------EEGKKLLQPSQDLLVLQK-----YDVAVSIGGNFLTTFLNKCKS 850

Query: 165  ESDNS-FAILTKILLEDLLNMLSLPEWCGTETIIRQFAMNLVMTVTN 28
             S+ + F  L +  + DLL  ++ PEW  +E ++      LV  V++
Sbjct: 851  RSNETDFRPLFENFIHDLLATVNKPEWPASELLLSLLGTMLVRYVSD 897


>AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,
            isoform F protein.
          Length = 2077

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
 Frame = -3

Query: 522  ITYKFSHLPTARSVSRTYRLSN-GKSIQYYSTLFVRLIQSCSIQNLFDSEIVQSESKSTE 346
            I      LP+++   R Y+L+N G +IQ  + L ++LIQ  +I  L DS  +    K + 
Sbjct: 747  ILTSIDRLPSSKKNLRPYKLTNNGGNIQMVTALVLQLIQCATI--LPDS--LCDNGKFSN 802

Query: 345  ALHSGNLTEHLKTVCNEH*IKINF*RVGRIILSKSRHEEYRIANHIVAYLLSRSLKQNKT 166
                GN  +       E   K+       ++L K     Y +A  I    L+  L + K+
Sbjct: 803  KPQEGNTFD-------EEGKKLLQPSQDLLVLQK-----YDVAVSIGGNFLTTFLNKCKS 850

Query: 165  ESDNS-FAILTKILLEDLLNMLSLPEWCGTETIIRQFAMNLVMTVTN 28
             S+ + F  L +  + DLL  ++ PEW  +E ++      LV  V++
Sbjct: 851  RSNETDFRPLFENFIHDLLATVNKPEWPASELLLSLLGTMLVRYVSD 897


>AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,
            isoform E protein.
          Length = 2077

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
 Frame = -3

Query: 522  ITYKFSHLPTARSVSRTYRLSN-GKSIQYYSTLFVRLIQSCSIQNLFDSEIVQSESKSTE 346
            I      LP+++   R Y+L+N G +IQ  + L ++LIQ  +I  L DS  +    K + 
Sbjct: 747  ILTSIDRLPSSKKNLRPYKLTNNGGNIQMVTALVLQLIQCATI--LPDS--LCDNGKFSN 802

Query: 345  ALHSGNLTEHLKTVCNEH*IKINF*RVGRIILSKSRHEEYRIANHIVAYLLSRSLKQNKT 166
                GN  +       E   K+       ++L K     Y +A  I    L+  L + K+
Sbjct: 803  KPQEGNTFD-------EEGKKLLQPSQDLLVLQK-----YDVAVSIGGNFLTTFLNKCKS 850

Query: 165  ESDNS-FAILTKILLEDLLNMLSLPEWCGTETIIRQFAMNLVMTVTN 28
             S+ + F  L +  + DLL  ++ PEW  +E ++      LV  V++
Sbjct: 851  RSNETDFRPLFENFIHDLLATVNKPEWPASELLLSLLGTMLVRYVSD 897


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,990,345
Number of Sequences: 53049
Number of extensions: 405273
Number of successful extensions: 918
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)