Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1500
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098997-3|AAC68713.1|  348|Caenorhabditis elegans Serpentine re...    29   2.3  
U28971-9|AAK68669.1|   90|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81056-1|CAB02902.1|  319|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z78060-5|CAB01492.1|  216|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AL022271-2|CAA18350.1|  216|Caenorhabditis elegans Hypothetical ...    27   7.0  

>AF098997-3|AAC68713.1|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein71 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 492 ARSVSRTYRLSNGKSIQYYSTLFVRLIQSCSIQNLFDSE 376
           A     TY L   +SI ++ TL +    SCSI  LF S+
Sbjct: 205 AEGFFETYMLMARRSIYFFRTLKILFFSSCSIYYLFISK 243


>U28971-9|AAK68669.1|   90|Caenorhabditis elegans Hypothetical
           protein B0244.11 protein.
          Length = 90

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 560 SSYPYQRD-FIIEESLTNFLTCPLLVRS 480
           SS+PY +  FI   SLT FL+C +L+ S
Sbjct: 48  SSFPYSQPVFISHTSLTIFLSCDILILS 75


>Z81056-1|CAB02902.1|  319|Caenorhabditis elegans Hypothetical
           protein F09F3.1 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 183 LKQNKTESDNSFAILTKILLEDLLNMLSLPEWCG 82
           +K+ +T S  ++AIL  I+ +  L + S+PE CG
Sbjct: 129 IKRFRTTSAINWAILICIIFDTALAIFSIPEGCG 162


>Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical
           protein F25C8.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 264 LHVRN*FLFSVHYILFSDVLLSYLS 338
           +HVR+   FS+HY++F  VL S  S
Sbjct: 101 VHVRDSMAFSLHYLMFLPVLQSQAS 125


>Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical
           protein T02E9.1 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 201 YLLSRSLKQNKTESDNSFAILTKILLEDLLNMLSLP 94
           + ++RSLK + T   N+F  +  +   DLL  +S+P
Sbjct: 46  FFITRSLKSSVTALGNTFIYIVALCAVDLLVTVSIP 81


>Z78060-5|CAB01492.1|  216|Caenorhabditis elegans Hypothetical
           protein C34D1.5 protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 366 SESKSTEALHSGNLTEHLKTVCNEH*IKINF*RVG 262
           S+    E+LH  N  +HL+T+  E  ++ +F R G
Sbjct: 61  SDDSDDESLHRSNQLKHLETLFKESILRTSFSRPG 95


>AL022271-2|CAA18350.1|  216|Caenorhabditis elegans Hypothetical
           protein C34D1.5 protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 366 SESKSTEALHSGNLTEHLKTVCNEH*IKINF*RVG 262
           S+    E+LH  N  +HL+T+  E  ++ +F R G
Sbjct: 61  SDDSDDESLHRSNQLKHLETLFKESILRTSFSRPG 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,845,054
Number of Sequences: 27780
Number of extensions: 231418
Number of successful extensions: 493
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)