Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1500
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54360.2 68414.m06198 expressed protein                             31   0.70 
At1g54360.1 68414.m06197 expressed protein                             31   0.70 
At5g38080.1 68418.m04588 hypothetical protein                          29   1.6  
At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containi...    27   6.5  
At2g07240.1 68415.m00831 Ulp1 protease family protein contains P...    27   8.7  
At1g04950.2 68414.m00493 TATA box-binding protein-associated fac...    27   8.7  
At1g04950.1 68414.m00492 TATA box-binding protein-associated fac...    27   8.7  

>At1g54360.2 68414.m06198 expressed protein
          Length = 447

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 551 PYQRDFIIEESLTNFLTCPLLVRSQGPIDSLTVNPYNTIQPYLY 420
           P+   FI EE + N    P+L+       SL  NP+  I+PYL+
Sbjct: 142 PFFTSFIAEEIVKNMDNYPILLALMRLARSLLHNPHVHIEPYLH 185


>At1g54360.1 68414.m06197 expressed protein
          Length = 447

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 551 PYQRDFIIEESLTNFLTCPLLVRSQGPIDSLTVNPYNTIQPYLY 420
           P+   FI EE + N    P+L+       SL  NP+  I+PYL+
Sbjct: 142 PFFTSFIAEEIVKNMDNYPILLALMRLARSLLHNPHVHIEPYLH 185


>At5g38080.1 68418.m04588 hypothetical protein 
          Length = 157

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 99  LPEWCGTETIIRQFAMNLVMTVTNDKQAVSSKN 1
           L +WC  + +   FAMN VM + N +  +S +N
Sbjct: 23  LRDWCMNKNLQYNFAMNFVMIIINIEAILSIRN 55


>At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containing
           protein strong similarity to PCMP-H2 [Arabidopsis
           thaliana] GI:5050911; contains Pfam profile PF01535: PPR
           repeat
          Length = 783

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/70 (20%), Positives = 30/70 (42%)
 Frame = -3

Query: 507 SHLPTARSVSRTYRLSNGKSIQYYSTLFVRLIQSCSIQNLFDSEIVQSESKSTEALHSGN 328
           +H    ++   TY+L N   +  Y+   +        + + + +++   +  T   H+G+
Sbjct: 351 AHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGS 410

Query: 327 LTEHLKTVCN 298
             E LK  CN
Sbjct: 411 YDEALKLFCN 420


>At2g07240.1 68415.m00831 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 928

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -3

Query: 510 FSHLPTARSVSRTYRLSNGKSIQYYSTLF 424
           F   P      R  R   GK I YYSTLF
Sbjct: 13  FGEEPLGERFRRRRREGRGKQIPYYSTLF 41


>At1g04950.2 68414.m00493 TATA box-binding protein-associated factor
           (TAF) family protein contains Pfam profile: PF02969 TATA
           box binding protein associated factor
          Length = 549

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 551 PYQRDFIIEESLTNFLTCPLLVRSQGPIDSLTVNPYNTIQPYLY 420
           PY  +FI +E         LL      + SL  NP+  I+PYL+
Sbjct: 212 PYFTNFIADEVSNGLNDFRLLFNLMHIVRSLLQNPHIHIEPYLH 255


>At1g04950.1 68414.m00492 TATA box-binding protein-associated factor
           (TAF) family protein contains Pfam profile: PF02969 TATA
           box binding protein associated factor
          Length = 549

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 551 PYQRDFIIEESLTNFLTCPLLVRSQGPIDSLTVNPYNTIQPYLY 420
           PY  +FI +E         LL      + SL  NP+  I+PYL+
Sbjct: 212 PYFTNFIADEVSNGLNDFRLLFNLMHIVRSLLQNPHIHIEPYLH 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,874,564
Number of Sequences: 28952
Number of extensions: 203828
Number of successful extensions: 468
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)