Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1499
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    29   0.78 
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    29   0.78 
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    27   1.8  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    27   1.8  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    27   3.2  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    25   9.7  
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    25   9.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.7  

>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 202 KAGSRYEPQAELGLSHVLDQL 264
           KAGSRYE +   G+SH +D+L
Sbjct: 74  KAGSRYETKKFSGVSHFMDRL 94


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 276 TKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSN 434
           TKN S   ++ +    GA+++A   RE   Y   A ++ + +A+ +L ++++N
Sbjct: 76  TKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTN 128


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 187 VTIAFKAGSRYEPQAELGLSHVLDQ 261
           +++   AGSRY+P A  G+SH+L++
Sbjct: 45  LSVVINAGSRYQPDA--GVSHLLEK 67


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 348 DREFIYYTLEATQDKLNDALEILNNLVSNQEFRP 449
           +RE  YY L+   +KL++ +  LN  + ++   P
Sbjct: 429 ERELKYYELKRKDEKLDEGIRALNQALHHESIMP 462


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -1

Query: 239 PNSACGS*REPALKAIVTRVTGEPLSKAATNVLLGKTLDWILTSFFTAGAA 87
           PN ACG+ R+   + + T ++   +  +A N      LDW + S +   A+
Sbjct: 202 PNCACGAKRQLEFQILPTLISSMNIDHSAKN-----ALDWGILSIYVCSAS 247


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 544 IGCLMEQIYSTNWG--GREIISYFRRGALSLSSHGLN 440
           I  L+  + S  W   G  ++ YF++  LS+S H +N
Sbjct: 100 INLLLSSLSSLKWISIGSILLPYFKKKELSISEHKIN 136


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 5   VFRNLRKWHPKLSSPPLFVMLRSGATPKL 91
           V+R L +WH KL     F  ++    PK+
Sbjct: 77  VYRQLLRWHAKLPRVQPFYAVKCNPDPKV 105


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +1

Query: 109 DVRIQSSVLPNKTFVAA---LDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLDQLLD 270
           DV+ +S  LP   + A     D+GS  +R  +   +    E   E+G+ H+L    D
Sbjct: 132 DVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRD 188


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -2

Query: 484 YFRRGALSLSSHGLNSWFETKLFRISSASFNLSCVASKV**MNSLSPEAL 335
           YF     S++ H   + F T +  +++ SFN++ + S    ++  SP  L
Sbjct: 182 YFNTSVTSVAVHNSTTVFPTSVPIVNTTSFNVTTIPSSA--VHYASPSGL 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,630
Number of Sequences: 5004
Number of extensions: 56086
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)