Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1499
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 50 2e-06
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 47 1e-05
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 44 1e-04
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 32 0.47
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 29 3.3
12_02_0312 + 17395716-17398112 29 4.3
11_06_0545 + 24839536-24843421,24843871-24844310 29 4.3
04_03_0910 + 20751014-20753437 29 4.3
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 5.7
08_01_0705 + 6231220-6231390,6231900-6231954,6232043-6232194,623... 28 7.6
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535... 28 7.6
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Frame = +3
Query: 234 IGIVACTRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEI 413
+G + A TT N S + R++ +G V AS +RE + Y+ A + + + +E+
Sbjct: 116 LGATQLLKKMAYTTTTNRSHLRVVREIEAVGGNVKASANREMMSYSYAALKTYMPEMVEV 175
Query: 414 LNNLVSNQEFRPWELNDNAPRLKYDII---SLPPQFVL 518
L + V N F WE+ + +LK ++ S P F+L
Sbjct: 176 LIDCVRNPAFLDWEVKEQIMKLKAELAEASSNPETFLL 213
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +3
Query: 273 TTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPW 452
+T N S + R++ IG VSAS RE + YT +A + + + +E+L + V N F W
Sbjct: 122 STTNRSHLRLVREVEAIGGNVSASASREQMCYTYDAFKAYVPEMVEVLIDSVRNPAFFNW 181
Query: 453 ELNDNAPRLKYDI--ISLPPQFVL 518
E+ + ++K +I +S PQ +L
Sbjct: 182 EIKEQLEKIKAEIAEVSDNPQGLL 205
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 127 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLDQL 264
+ LPN +A+ + SP V + GS YE A G SH+L+++
Sbjct: 73 TTLPNGIKIASETSVSPAASVGLYIDCGSIYETPASSGASHLLERM 118
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/73 (31%), Positives = 39/73 (53%)
Frame = +3
Query: 273 TTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPW 452
+T N S + R++ IG V AS RE + YT +A + + +E+L + V N F W
Sbjct: 174 STTNRSHLRLVREVEAIGGNVFASASREQMSYTYDALKCYAPEMVEVLIDSVRNPAFLEW 233
Query: 453 ELNDNAPRLKYDI 491
E+ + ++K +I
Sbjct: 234 EVKEQLQKIKSEI 246
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 127 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLDQL 264
+ LPN +A+ + P V + GS YE + G SH+L+++
Sbjct: 125 TTLPNGIKIASETSPIPAVSVGLYIDCGSVYETSSSSGTSHLLERM 170
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 518 VDLLHKAAYRRGLGXXLFISPKRINDISSESLQLFASQNIT 640
++ LH A Y L L S +N + +L+ F S+N T
Sbjct: 258 MEALHSAGYSGALAKPLMASESAVNRLDVATLEEFVSENYT 298
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 127 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLDQL 264
+ LPN VA+ D P V + +GS YE G+SH+L++L
Sbjct: 67 TTLPNGVRVASEDLPGPSACVGVFVDSGSVYETAETAGVSHLLERL 112
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 127 SVLPNKTFVAALDN-GSPVTRVTIAFKAGSRYEPQAELGLSHVLDQLL 267
+ LPN VA + S V + AGSRYE + G++H ++ +L
Sbjct: 102 TTLPNGLRVATESSLASRTATVGVWIDAGSRYETEDSAGVAHFVEHML 149
>12_02_0312 + 17395716-17398112
Length = 798
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +3
Query: 255 RSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSN 434
+S +G + K ++ +Q+KL ++ SGD+ ++ + + D +ND E++N L S
Sbjct: 240 QSDSGESNKQLTLEALQKKLHEL------SGDKRYLLVLDDISHDNINDWEELMNLLPSG 293
Query: 435 Q 437
+
Sbjct: 294 R 294
>11_06_0545 + 24839536-24843421,24843871-24844310
Length = 1441
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 345 GDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWE 455
GD +FI +E+ Q L DA + NN S+Q+ W+
Sbjct: 29 GDVQFIKDEMESMQGFLLDAADAANNNSSSQQVLAWQ 65
>04_03_0910 + 20751014-20753437
Length = 807
Score = 28.7 bits (61), Expect = 4.3
Identities = 25/82 (30%), Positives = 34/82 (41%)
Frame = +1
Query: 133 LPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLDQLLD*QPRILVVSLFNAN 312
+PNKT V + GSPVT T + S P L + D + + + S
Sbjct: 75 VPNKTHVWIANRGSPVTDATSSHLTIS---PDGNLAIVSRADSSIVWSSQANITSNNTVA 131
Query: 313 SLRLEHMLVLLETENSSITLWK 378
L LVL + NSS LW+
Sbjct: 132 VLLDTGNLVLQSSSNSSHILWE 153
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 28 ASKTLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDN 168
A + + P IRH+ ++ +++ AV R Q S+ P+K V+ L +
Sbjct: 673 ARRVSLTPVIRHIPLQPKRRSSLAVLPTQREQLSIFPDKRSVSRLSH 719
>08_01_0705 +
6231220-6231390,6231900-6231954,6232043-6232194,
6232252-6232335,6232614-6232797,6232885-6232988,
6233109-6233183,6233366-6233405,6233495-6233577,
6233687-6233764,6233868-6234011,6234093-6234160,
6234831-6234945,6235045-6235201,6235311-6235408
Length = 535
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 401 IIQFVLCCFQ-SVIDEFSVSRSTNICSNL 318
+I +VL CFQ SVI F V S++ CS +
Sbjct: 159 VISYVLVCFQSSVILRFMVFFSSDFCSGI 187
>04_04_1122 +
31052497-31052629,31053133-31053191,31053285-31053579,
31054099-31054279,31054739-31054956,31055522-31055739,
31055842-31055958,31056106-31056128,31056223-31056438,
31056536-31056677,31056822-31057067,31057659-31057856,
31058331-31058379,31060835-31060911,31061266-31061551,
31061661-31061841,31062149-31062344,31062630-31062738,
31062861-31062961,31063155-31063267,31063347-31063442,
31063531-31063746,31063857-31063995,31064087-31064332,
31064605-31064940
Length = 1396
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 294 FLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNA 470
F I ++Q+GA VSA R+ + +E D L + + +SN P E +NA
Sbjct: 506 FAIFNSVNQLGAKVSAVQGRDVTKHLIEIWLDLLRSMMTEVEWRISNYVPTPEEYMENA 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,611,914
Number of Sequences: 37544
Number of extensions: 351737
Number of successful extensions: 695
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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