Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1499
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)         48   5e-06
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       31   1.1  
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
          Length = 593

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 23/56 (41%), Positives = 37/56 (66%)
 Frame = +1

Query: 88  AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVL 255
           A  +V++   +Q + L N   VA+L+  SP++RV + F AGSRYE  + LG++H+L
Sbjct: 20  AKGSVRERQTVQVTTLDNGLKVASLETYSPISRVGLFFDAGSRYETDSNLGITHML 75


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 127 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLDQL 264
           + LPN   VA+ ++    + V +    GSRYE     G++HV++++
Sbjct: 420 TTLPNGIKVASEESFGQFSTVGVVIDGGSRYEVDHPNGVTHVIEKM 465


>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 121 QSSVLPNKTFVAALDNGSPVTRVTIAFKAGS 213
           Q S L N T+    DNGSP+T V I    GS
Sbjct: 546 QFSHLVNLTWKLGRDNGSPITHVIIQQHVGS 576


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,235,049
Number of Sequences: 59808
Number of extensions: 408391
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)