Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1499
(659 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrom... 61 3e-09
BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c ... 61 3e-09
BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein. 61 3e-09
L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c re... 36 0.17
D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein. 36 0.17
BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c ... 36 0.17
BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein. 30 6.4
BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein. 30 6.4
>J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrome
bc-1 complex core protein II mRNA, complete cds. ).
Length = 453
Score = 61.3 bits (142), Expect = 3e-09
Identities = 31/85 (36%), Positives = 47/85 (55%)
Frame = +3
Query: 234 IGIVACTRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEI 413
+G R + LTTK SSF I R + +G +S + RE + YT+E + ++ +E
Sbjct: 77 LGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEF 136
Query: 414 LNNLVSNQEFRPWELNDNAPRLKYD 488
L N+ + EFR WE+ D P+LK D
Sbjct: 137 LLNVTTAPEFRRWEVADLQPQLKID 161
Score = 49.6 bits (113), Expect = 1e-05
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +1
Query: 70 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSH 249
++ A A A + ++ + LPN +A+L+N SPV+R+ + KAGSRYE + LG +H
Sbjct: 22 VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTH 81
Query: 250 VL 255
+L
Sbjct: 82 LL 83
>BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c
reductase core protein II protein.
Length = 453
Score = 61.3 bits (142), Expect = 3e-09
Identities = 31/85 (36%), Positives = 47/85 (55%)
Frame = +3
Query: 234 IGIVACTRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEI 413
+G R + LTTK SSF I R + +G +S + RE + YT+E + ++ +E
Sbjct: 77 LGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEF 136
Query: 414 LNNLVSNQEFRPWELNDNAPRLKYD 488
L N+ + EFR WE+ D P+LK D
Sbjct: 137 LLNVTTAPEFRRWEVADLQPQLKID 161
Score = 49.6 bits (113), Expect = 1e-05
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +1
Query: 70 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSH 249
++ A A A + ++ + LPN +A+L+N SPV+R+ + KAGSRYE + LG +H
Sbjct: 22 VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTH 81
Query: 250 VL 255
+L
Sbjct: 82 LL 83
>BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein.
Length = 453
Score = 61.3 bits (142), Expect = 3e-09
Identities = 31/85 (36%), Positives = 47/85 (55%)
Frame = +3
Query: 234 IGIVACTRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEI 413
+G R + LTTK SSF I R + +G +S + RE + YT+E + ++ +E
Sbjct: 77 LGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEF 136
Query: 414 LNNLVSNQEFRPWELNDNAPRLKYD 488
L N+ + EFR WE+ D P+LK D
Sbjct: 137 LLNVTTAPEFRRWEVADLQPQLKID 161
Score = 49.6 bits (113), Expect = 1e-05
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +1
Query: 70 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSH 249
++ A A A + ++ + LPN +A+L+N SPV+R+ + KAGSRYE + LG +H
Sbjct: 22 VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTH 81
Query: 250 VL 255
+L
Sbjct: 82 LL 83
>L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core I protein protein.
Length = 480
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +3
Query: 276 TKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSN 434
TKN +++++ +GA+++A RE Y ++A L A+E+L ++V N
Sbjct: 101 TKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQN 153
>D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein.
Length = 480
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +3
Query: 276 TKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSN 434
TKN +++++ +GA+++A RE Y ++A L A+E+L ++V N
Sbjct: 101 TKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQN 153
>BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core protein I protein.
Length = 480
Score = 35.5 bits (78), Expect = 0.17
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +3
Query: 276 TKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSN 434
TKN +++++ +GA+++A RE Y ++A L A+E+L ++V N
Sbjct: 101 TKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQN 153
>BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein.
Length = 480
Score = 30.3 bits (65), Expect = 6.4
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 276 TKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSN 434
TK S ++ ++ +GA+++A RE Y +A L A+EIL +++ N
Sbjct: 102 TKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQN 154
>BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein.
Length = 490
Score = 30.3 bits (65), Expect = 6.4
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 276 TKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSN 434
TK S ++ ++ +GA+++A RE Y +A L A+EIL +++ N
Sbjct: 111 TKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQN 163
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,199,478
Number of Sequences: 237096
Number of extensions: 1899926
Number of successful extensions: 3529
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3529
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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