Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1499
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    52   3e-07
At3g16480.1 68416.m02103 mitochondrial processing peptidase alph...    51   6e-07
At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containi...    28   6.3  
At3g02090.2 68416.m00175 mitochondrial processing peptidase beta...    27   8.4  
At3g02090.1 68416.m00174 mitochondrial processing peptidase beta...    27   8.4  

>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 25/76 (32%), Positives = 44/76 (57%)
 Frame = +3

Query: 273 TTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPW 452
           +T N + F + R++  IG   SAS  RE + YT++A +  + + +E+L + V N  F  W
Sbjct: 130 STLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDW 189

Query: 453 ELNDNAPRLKYDIISL 500
           E+N+   ++K +I  L
Sbjct: 190 EVNEELRKMKVEIAEL 205



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 115 RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLDQL 264
           ++Q + LPN   +A+    +P   + +    GS YE     G +H+L+++
Sbjct: 77  KLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGATHLLERM 126


>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 499

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 25/73 (34%), Positives = 43/73 (58%)
 Frame = +3

Query: 273 TTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPW 452
           +T N S F + R++  IG   SAS  RE + YT++A +  + + +E+L + V N  F  W
Sbjct: 126 STLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDW 185

Query: 453 ELNDNAPRLKYDI 491
           E+N+   ++K +I
Sbjct: 186 EVNEELRKVKVEI 198



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +1

Query: 115 RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLDQL 264
           +++++ LPN   +A   + +P   + +    GS YE     G +H+L+++
Sbjct: 73  KLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATHLLERM 122


>At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 633

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 362 DEFSVSRSTNICSNLREFALNKE 294
           DE++VS   +ICS+LRE +  K+
Sbjct: 234 DEYTVSMVVSICSDLRELSKGKQ 256


>At3g02090.2 68416.m00175 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 535

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 127 SVLPNKTFVAALDNGSPVTR-VTIAFKAGSRYEPQAELGLSHVLDQLL 267
           + LPN   VA   N S  T  V +   AGSR+E     G +H L+ ++
Sbjct: 100 TTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMI 147


>At3g02090.1 68416.m00174 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 531

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 127 SVLPNKTFVAALDNGSPVTR-VTIAFKAGSRYEPQAELGLSHVLDQLL 267
           + LPN   VA   N S  T  V +   AGSR+E     G +H L+ ++
Sbjct: 100 TTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMI 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,370,788
Number of Sequences: 28952
Number of extensions: 292489
Number of successful extensions: 657
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)