Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1498
(716 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DB6DAF Cluster: PREDICTED: similar to CG10955-PA... 89 8e-17
UniRef50_Q9W261 Cluster: RNA polymerase-associated protein Rtf1;... 75 2e-12
UniRef50_Q28XT6 Cluster: GA10665-PA; n=1; Drosophila pseudoobscu... 73 5e-12
UniRef50_Q92541 Cluster: RNA polymerase-associated protein RTF1 ... 71 3e-11
UniRef50_UPI00005845E4 Cluster: PREDICTED: similar to Rtf1, Paf1... 65 1e-09
UniRef50_Q6INV7 Cluster: LOC432204 protein; n=4; Tetrapoda|Rep: ... 58 3e-07
UniRef50_A4SAP2 Cluster: Predicted protein; n=2; Ostreococcus|Re... 44 0.004
UniRef50_P90845 Cluster: Putative uncharacterized protein; n=2; ... 44 0.005
UniRef50_Q54LP1 Cluster: Putative uncharacterized protein; n=1; ... 37 0.57
UniRef50_UPI00006CB905 Cluster: hypothetical protein TTHERM_0072... 36 0.76
UniRef50_A2D894 Cluster: Putative uncharacterized protein; n=1; ... 35 1.7
UniRef50_A5K6T4 Cluster: 50S ribosomal protein L29, putative; n=... 34 3.0
UniRef50_A6PJT3 Cluster: Putative uncharacterized protein; n=1; ... 34 4.0
UniRef50_O94667 Cluster: RNA polymerase II associated Paf1 compl... 34 4.0
UniRef50_UPI0000F214EA Cluster: PREDICTED: hypothetical protein;... 33 5.3
UniRef50_UPI0000499A14 Cluster: actin-related protein; n=1; Enta... 33 5.3
UniRef50_Q72WB5 Cluster: Arsenate reductase; n=7; Bacteria|Rep: ... 33 5.3
UniRef50_Q0U279 Cluster: Putative uncharacterized protein; n=1; ... 33 5.3
UniRef50_UPI0000DB8004 Cluster: PREDICTED: similar to futsch CG3... 33 7.0
UniRef50_A2FNC4 Cluster: Variable membrane protein, putative; n=... 33 7.0
UniRef50_Q9HGI4 Cluster: Eukaryotic peptide chain release factor... 33 7.0
UniRef50_Q21LT8 Cluster: GGDEF domain; n=1; Saccharophagus degra... 33 9.3
UniRef50_A2E3U4 Cluster: Putative uncharacterized protein; n=1; ... 33 9.3
>UniRef50_UPI0000DB6DAF Cluster: PREDICTED: similar to CG10955-PA;
n=3; Endopterygota|Rep: PREDICTED: similar to CG10955-PA
- Apis mellifera
Length = 692
Score = 89.4 bits (212), Expect = 8e-17
Identities = 49/99 (49%), Positives = 60/99 (60%)
Frame = +1
Query: 211 RVEGDRAKEI*NQEDIESAGSEKEKDTFSEPEEGXXXXXXXXXXXXXXXXXXXXGYDENL 390
+V R K + E + SEKE + SEPEEG GYD+ L
Sbjct: 81 KVPTKRNKRKMTKSSSEESASEKEPEKVSEPEEGEVSDSDASVSDSSQEEFND-GYDDKL 139
Query: 391 MGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIE 507
MGD ED+ARLA M+EKEREQEIFKRIE+R++MKTR+EIE
Sbjct: 140 MGDAEDQARLAQMTEKEREQEIFKRIEQREIMKTRFEIE 178
>UniRef50_Q9W261 Cluster: RNA polymerase-associated protein Rtf1;
n=4; Coelomata|Rep: RNA polymerase-associated protein
Rtf1 - Drosophila melanogaster (Fruit fly)
Length = 775
Score = 74.9 bits (176), Expect = 2e-12
Identities = 31/45 (68%), Positives = 41/45 (91%)
Frame = +1
Query: 373 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIE 507
G+D++LMGD+EDR RL +SEKERE EI+KRIE+R++M+TRWEIE
Sbjct: 159 GFDDDLMGDDEDRRRLNGLSEKERETEIYKRIEQREIMRTRWEIE 203
>UniRef50_Q28XT6 Cluster: GA10665-PA; n=1; Drosophila
pseudoobscura|Rep: GA10665-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 764
Score = 73.3 bits (172), Expect = 5e-12
Identities = 31/45 (68%), Positives = 40/45 (88%)
Frame = +1
Query: 373 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIE 507
G+D+++MGDEEDR RL +SEKERE EIFKRIE+R++ +TRWEIE
Sbjct: 153 GFDDDMMGDEEDRKRLNDLSEKERETEIFKRIEQREIRRTRWEIE 197
>UniRef50_Q92541 Cluster: RNA polymerase-associated protein RTF1
homolog; n=40; Eumetazoa|Rep: RNA polymerase-associated
protein RTF1 homolog - Homo sapiens (Human)
Length = 670
Score = 70.9 bits (166), Expect = 3e-11
Identities = 31/45 (68%), Positives = 40/45 (88%)
Frame = +1
Query: 373 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIE 507
GY E+LMGDEEDRARL M+EKEREQE+F RIE+R+++K R+EI+
Sbjct: 141 GYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIK 185
>UniRef50_UPI00005845E4 Cluster: PREDICTED: similar to Rtf1,
Paf1/RNA polymerase II complex component, homolog (S.
cerevisiae); n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to Rtf1, Paf1/RNA polymerase II
complex component, homolog (S. cerevisiae) -
Strongylocentrotus purpuratus
Length = 690
Score = 65.3 bits (152), Expect = 1e-09
Identities = 28/45 (62%), Positives = 36/45 (80%)
Frame = +1
Query: 373 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIE 507
GYDEN +GDEED+ L M+EKEREQ I+ R E+RD ++TR+EIE
Sbjct: 127 GYDENFIGDEEDKEMLEKMTEKEREQVIYNRSEKRDALRTRYEIE 171
>UniRef50_Q6INV7 Cluster: LOC432204 protein; n=4; Tetrapoda|Rep:
LOC432204 protein - Xenopus laevis (African clawed frog)
Length = 609
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/37 (67%), Positives = 33/37 (89%)
Frame = +1
Query: 397 DEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIE 507
DEEDRARL M+EKEREQE+F RIE+R+++K R+EI+
Sbjct: 556 DEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIK 592
>UniRef50_A4SAP2 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 576
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/41 (46%), Positives = 30/41 (73%)
Frame = +1
Query: 373 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTR 495
GY +LMGD DRARLA+++E ERE+ + +R + R +++R
Sbjct: 34 GYGSDLMGDAADRARLASLNELEREEIMLERADARKRLESR 74
>UniRef50_P90845 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 613
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = +1
Query: 379 DENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 504
D++L D+ED+AR ++E E+EQEIF+R+E R+ R EI
Sbjct: 78 DDDLFADKEDKARWKKLTELEKEQEIFERMEARENAIAREEI 119
>UniRef50_Q54LP1 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 627
Score = 36.7 bits (81), Expect = 0.57
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 373 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRW 498
GYDE+L D+ DR L+ + E +RE + +R E+R + W
Sbjct: 88 GYDEDLYKDDNDRYELSLLPEIDRENILSERYEKRKEARELW 129
>UniRef50_UPI00006CB905 Cluster: hypothetical protein
TTHERM_00729160; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00729160 - Tetrahymena
thermophila SB210
Length = 481
Score = 36.3 bits (80), Expect = 0.76
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1
Query: 373 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMK 489
GYD + DEEDR +L M+E +R E+ +R+E R+ K
Sbjct: 35 GYDTDGYKDEEDRKKLNQMNEVDRVNELNRRLEERNNKK 73
>UniRef50_A2D894 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 473
Score = 35.1 bits (77), Expect = 1.7
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 373 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERR-DLMK 489
GYDE+ D+ D L MS+ RE+E R +RR +LMK
Sbjct: 61 GYDEDFYHDDADEVALDQMSQLYREEEKMNRADRREELMK 100
>UniRef50_A5K6T4 Cluster: 50S ribosomal protein L29, putative; n=2;
Plasmodium|Rep: 50S ribosomal protein L29, putative -
Plasmodium vivax
Length = 280
Score = 34.3 bits (75), Expect = 3.0
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +2
Query: 191 KQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRK 310
K+ + E+K+ EPK++E +K K+ ++K IPSV ++K
Sbjct: 129 KEEAKKVEAKKVEPKKAEPKKDPKIEPPKKKFIPSVLKQK 168
>UniRef50_A6PJT3 Cluster: Putative uncharacterized protein; n=1;
Shewanella sediminis HAW-EB3|Rep: Putative
uncharacterized protein - Shewanella sediminis HAW-EB3
Length = 529
Score = 33.9 bits (74), Expect = 4.0
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = +1
Query: 244 NQEDIESAGSEKEKDTFSE--PEEGXXXXXXXXXXXXXXXXXXXXGYDENLMGDEEDRAR 417
N ED E+AG++ E + E PE ++NL+ D+ A
Sbjct: 286 NIEDEEAAGADSEGEAEEELLPENCILTLEQSAIHGERFQRMFFDFVNDNLLNDKGLNAE 345
Query: 418 LAAMSEKEREQEIFKRIERRDLMKTRWEIELSYA*RDV 531
+A SE++ E+ ++I RD KT+ E +YA R +
Sbjct: 346 IAPESERKSEE---RKILNRDAKKTKSERPYNYATRSI 380
>UniRef50_O94667 Cluster: RNA polymerase II associated Paf1 complex;
n=1; Schizosaccharomyces pombe|Rep: RNA polymerase II
associated Paf1 complex - Schizosaccharomyces pombe
(Fission yeast)
Length = 560
Score = 33.9 bits (74), Expect = 4.0
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 382 ENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIEL 510
E DE DRA++ AM+E ERE +F+R E + R E+ +
Sbjct: 77 EGKFKDEADRAKIMAMTEIERESILFEREEEISKLMERRELAI 119
>UniRef50_UPI0000F214EA Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 140
Score = 33.5 bits (73), Expect = 5.3
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 220 GDRAKEI*NQEDIESAGSEKEKDTFSEPEEGXXXXXXXXXXXXXXXXXXXXGYDENLMGD 399
G+ +E+ N+E+ E G+E E++ E EE G DE+ GD
Sbjct: 77 GEGEEEVGNEEEEEEGGNENEEE--EEEEEDGEHKEGESEGEEEEEGSEEGGSDESAGGD 134
Query: 400 EEDRAR 417
EED+ R
Sbjct: 135 EEDKRR 140
>UniRef50_UPI0000499A14 Cluster: actin-related protein; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: actin-related
protein - Entamoeba histolytica HM-1:IMSS
Length = 1190
Score = 33.5 bits (73), Expect = 5.3
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 191 KQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQ 334
K ++ SK+ EP+ ET+K + LD + KKI QRK K L ++Q
Sbjct: 424 KSKTASLSSKQKEPEEIETKK--QELDDQAKKIEEEKQRKEKELKLQQ 469
>UniRef50_Q72WB5 Cluster: Arsenate reductase; n=7; Bacteria|Rep:
Arsenate reductase - Leptospira interrogans serogroup
Icterohaemorrhagiae serovarcopenhageni
Length = 120
Score = 33.5 bits (73), Expect = 5.3
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 218 KETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMTQLTLKRNL 367
+ET PK+SE + L+ L KK+ + S K L ++ ++ L+L+ L
Sbjct: 36 RETPPKKSELKTMLQYLGNESKKLFNTSGNDYKELGLKDKLSSLSLEEQL 85
>UniRef50_Q0U279 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 276
Score = 33.5 bits (73), Expect = 5.3
Identities = 29/108 (26%), Positives = 50/108 (46%)
Frame = +1
Query: 172 EQRLASEAGFLR*RVEGDRAKEI*NQEDIESAGSEKEKDTFSEPEEGXXXXXXXXXXXXX 351
EQ+L EA +R +G RA++ ++ +E E+++ TF +P+
Sbjct: 118 EQKLVLEADEVRALKDGSRAEQSKHRVYVED---EEQQQTF-DPDSWFGRGQDMPNQISH 173
Query: 352 XXXXXXXGYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTR 495
GY ++ +EE AR MS+K+ E + + E+R KTR
Sbjct: 174 AEEPQFEGYSDD-DDEEEPAARPKTMSKKQIEAQELAKKEKRAFNKTR 220
>UniRef50_UPI0000DB8004 Cluster: PREDICTED: similar to futsch
CG3064-PB; n=1; Apis mellifera|Rep: PREDICTED: similar to
futsch CG3064-PB - Apis mellifera
Length = 6323
Score = 33.1 bits (72), Expect = 7.0
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 203 SDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVK 316
+DE+ K+ E K E K LKV +++ +K P V ++++K
Sbjct: 2012 ADEKFKKEEKKLEEEEKELKVEEKKEEKKPEVEEKELK 2049
>UniRef50_A2FNC4 Cluster: Variable membrane protein, putative; n=1;
Trichomonas vaginalis G3|Rep: Variable membrane protein,
putative - Trichomonas vaginalis G3
Length = 2191
Score = 33.1 bits (72), Expect = 7.0
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 379 DENLMGDEEDRARLAAMSEKEREQEIFKRIE----RRDLMKTRWEIELSYA*RDVLRLND 546
+E +EE++ RL K+ E+E KR+E +RD MK + + ELS +ND
Sbjct: 829 EEKRKQEEEEKQRLEEEKRKQEEEEEKKRLEEEKRKRDEMKRKSKEELSQLVGS--GIND 886
Query: 547 LHLREK 564
+H+ E+
Sbjct: 887 VHVEER 892
>UniRef50_Q9HGI4 Cluster: Eukaryotic peptide chain release factor
GTP-binding subunit; n=2; Zygosaccharomyces rouxii|Rep:
Eukaryotic peptide chain release factor GTP-binding
subunit - Zygosaccharomyces rouxii (Candida mogii)
Length = 662
Score = 33.1 bits (72), Expect = 7.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 191 KQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVK 316
K ++ESK+ EPKR T + D +++ +P + + K+K
Sbjct: 160 KAEPKEQESKKEEPKREGTPRPAAAKDEKKEDLPKLEKLKIK 201
>UniRef50_Q21LT8 Cluster: GGDEF domain; n=1; Saccharophagus
degradans 2-40|Rep: GGDEF domain - Saccharophagus
degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Length = 694
Score = 32.7 bits (71), Expect = 9.3
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 45 DPQGSHPTVIQMMIMTKNLITLSHQHHRLILIQTVTPKAMHPRAETRLRSRLPQMKSRRR 224
D +GSHP V M + +++ L H L++I+ A+ R R R + RR
Sbjct: 88 DKEGSHPVVEGMKMGAADVVRLDEDQHLLLVIEREL-NALEQREHRRFAERRHKEVERRN 146
Query: 225 QSQRD 239
Q D
Sbjct: 147 QQLLD 151
>UniRef50_A2E3U4 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1463
Score = 32.7 bits (71), Expect = 9.3
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 191 KQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMTQL 349
KQ + DE S E EP + + + +K RRR+ +V + +HI Q T+L
Sbjct: 1065 KQMNLDEYSDEEEPPKPQPQPIMK---RRRRNPSNVDNSNIPVVHIAQQSTKL 1114
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,888,795
Number of Sequences: 1657284
Number of extensions: 7479212
Number of successful extensions: 29097
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 26546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28830
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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