Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1498
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    34   0.023
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    30   0.29 
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    27   2.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   2.7  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    27   2.7  

>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 382 ENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIEL 510
           E    DE DRA++ AM+E ERE  +F+R E    +  R E+ +
Sbjct: 77  EGKFKDEADRAKIMAMTEIERESILFEREEEISKLMERRELAI 119


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 397 DEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWE 501
           DE  R ++  + +KER++E F   ERRD  + +W+
Sbjct: 308 DESRRKKIELLEKKERDEEQFLEKERRDTAR-KWD 341


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 150 TPKAMHPRAETRLRSRLPQMKSRRRQSQRDLKP 248
           TP+ MHP +    + + P+ K R+R  +  L P
Sbjct: 100 TPRPMHPISHPLSQHKTPEFKHRKRNVESILTP 132


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 257 MSSWFQISLALSPSTLHLRKPASEASLCSWMHCFWRHCLNQNQTMML 117
           MS  FQ  LA S S++H +   +E +LC W + ++   ++QN   +L
Sbjct: 504 MSPLFQ-QLARSISSMHFQ--VAERALCLWSNEYFTSLVSQNVVTLL 547


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 15  MFNPHLSQGADPQGSHPTVIQMMIMTKNLITLSHQHHRLILIQ 143
           MFNP  +QG    G+HP           L+T  HQH  ++ +Q
Sbjct: 1   MFNPRYTQGTIYPGAHP----------GLLTPDHQHAAILSVQ 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,962
Number of Sequences: 5004
Number of extensions: 31813
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)