Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1498
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377... 36 0.024
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 33 0.30
12_01_1000 + 10138260-10138652,10138832-10139017,10139190-101394... 30 1.6
10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647 29 3.7
09_04_0153 + 15179064-15179210,15179598-15179668,15179831-151800... 29 3.7
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 29 3.7
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095 29 3.7
08_02_1182 + 24992256-24992708,24992942-24993238 28 8.5
07_01_1019 + 8714171-8714190,8714239-8714371,8714781-8714945,871... 28 8.5
>01_05_0619 -
23737178-23737378,23737460-23737516,23737597-23737755,
23739477-23739621,23739725-23740136,23740693-23740855
Length = 378
Score = 36.3 bits (80), Expect = 0.024
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +2
Query: 200 SSDEESKETEPKRSETRKTLKVLDRRRKKIPS--VSQRKVKYLHIRQTMTQLTLKRN 364
S++EE KE E K + KVL+ +RK + S V +RKV Q+M QL++K++
Sbjct: 229 SNEEEEKEPEDKEMTLEEYEKVLEEKRKALLSLKVEERKVVVDKELQSMQQLSVKKD 285
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 32.7 bits (71), Expect = 0.30
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +2
Query: 203 SDEESKETEPKRSETRKTLKVLDRRRKKIPSV--SQRKVKYLHIRQTMTQLTLKR 361
++EE KE E K + KVL+ +RK + ++ +RKV+ Q M QL++K+
Sbjct: 235 NEEEEKEPEDKEMTLEEYEKVLEEKRKALLALKAEERKVEVDKELQAMQQLSVKK 289
>12_01_1000 +
10138260-10138652,10138832-10139017,10139190-10139463,
10139815-10140065
Length = 367
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +1
Query: 394 GDEEDRARLAAMSEKEREQEIFKRIERR 477
G +E+RA +AA E+ERE+ ++ ++R+
Sbjct: 107 GGDEERAMIAASCERERERGVWAHLQRK 134
>10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647
Length = 263
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 373 GYDENLMGDE-EDRARLAAMSEKEREQEIFKRIERRDLMKTRW 498
GY + L + +D AR K+R+ E +R +R + ++TRW
Sbjct: 72 GYSKPLWDEHAKDEARRRHREAKQRKNEALQRQQRIEQVRTRW 114
>09_04_0153 +
15179064-15179210,15179598-15179668,15179831-15180017,
15180107-15180298
Length = 198
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 185 PPKQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYL 322
PP A+ E + R + R LK + +R+K+ S+++RK+ L
Sbjct: 24 PPPPAAERGERDRLDELRRDYRDVLKDNEMKRRKLESINKRKLVLL 69
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 29.1 bits (62), Expect = 3.7
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 373 GYDENL-MGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIELSYA*RDVLRLNDL 549
GY L + DEE R L EKER++E + E RDL E E RD RL +
Sbjct: 302 GYRRELDLRDEERRRDLLLEREKERDRE--RERELRDLRDRERERERE---RDRERLRER 356
Query: 550 HLREK*LEFER 582
RE+ LE ER
Sbjct: 357 E-RERELERER 366
>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
Length = 597
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 433 EKEREQEIFKRIERRDLMKTRWEIELSYA*RDVLRLND 546
E+ E+E + ERR RWE+EL + R V+ N+
Sbjct: 234 EQREEEEEEEAAERRSWTLERWELELKASRRRVVEANE 271
>08_02_1182 + 24992256-24992708,24992942-24993238
Length = 249
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 123 HRLILIQTVTPKAMHPRAETRLRSRLPQ 206
HRL+L Q +A PR RLRS LPQ
Sbjct: 41 HRLLLPQAAAARAARPR--RRLRSLLPQ 66
>07_01_1019 +
8714171-8714190,8714239-8714371,8714781-8714945,
8715810-8715890,8716223-8716318
Length = 164
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 385 NLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIE 507
+LM +EE A + E +E+ KR+E M RW E
Sbjct: 54 SLMSEEEVEAGTGGGGDGEAAEEVGKRVESTAAMGRRWAEE 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,253,291
Number of Sequences: 37544
Number of extensions: 211271
Number of successful extensions: 769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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