Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1498
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6594| Best HMM Match : No HMM Matches (HMM E-Value=.)               69   5e-12
SB_25607| Best HMM Match : LEA_1 (HMM E-Value=0.93)                    31   1.2  
SB_6007| Best HMM Match : PDEase_I (HMM E-Value=0)                     31   1.2  
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_8103| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   30   2.2  
SB_19020| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20)                    29   5.0  
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066)               28   8.7  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              28   8.7  
SB_42321| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_6594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 29/45 (64%), Positives = 38/45 (84%)
 Frame = +1

Query: 373 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIE 507
           G+D+NLMGDE DR  L  M+EKEREQEI+ R+E+R+ +KTR+EIE
Sbjct: 133 GWDDNLMGDEADREMLGRMTEKEREQEIYNRVEKREALKTRFEIE 177


>SB_25607| Best HMM Match : LEA_1 (HMM E-Value=0.93)
          Length = 118

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +2

Query: 188 PKQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQ 334
           P  AS+DE++K+ +P+R + RK +  L +  +K   + +++ K +   Q
Sbjct: 19  PSSASNDEKAKKKKPRRPKRRKIVSELTQNIQKNYKMWRQRAKEMEREQ 67


>SB_6007| Best HMM Match : PDEase_I (HMM E-Value=0)
          Length = 511

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +2

Query: 188 PKQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQ 334
           P  AS+DE++K+ +P+R + RK +  L +  +K   + +++ K +   Q
Sbjct: 427 PSSASNDEKAKKKKPRRPKRRKIVSELTQNIQKNYKMWRQRAKEMEREQ 475


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +3

Query: 21  NPHLSQGADPQGSHPTVIQMMIMTKNLITLSHQHHRLILIQTVTPKAMHPRAETRLRSRL 200
           NP +     P G+    + M  + + L   + Q+HR+I       K    RA+     ++
Sbjct: 364 NPQIMMNGQPIGAQRIPVAMETLDEPLYVNAKQYHRII-------KRRQARAKLEAEGKI 416

Query: 201 PQMKSRRRQS 230
           P+++  RR S
Sbjct: 417 PKVRKHRRTS 426


>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 191 KQASSDEESKETEPKRSETRKTLKVLD 271
           K+   +E  KETEPK SE R  L  LD
Sbjct: 310 KRKGHNERRKETEPKESEKRNKLTELD 336


>SB_8103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 213 SRRRQSQRDLKPGRH*KCWIGEGKRYL 293
           S++R   R  +PGRH   ++GEG+ YL
Sbjct: 149 SQKRGPNRSRRPGRHRCGYLGEGREYL 175


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 185  PPKQASSDEESKETEPKRSETRKTLKVLDRR-RKKIPSVSQRKVKYLH 325
            P K+ +SDEE    +P  S+   T +VLD R   + P + Q++  Y++
Sbjct: 4653 PAKEEASDEEDPHIKPVPSDKLHTNEVLDNRFDVETPELYQQEGSYIN 4700


>SB_19020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +2

Query: 194 QASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMTQLTLKRNLMM 373
           +   D  ++E E  +  ++KTL    +RRK   S+S  K++ L   + + Q+T +RN + 
Sbjct: 377 ETGQDVVNEEEEINKGTSKKTLN--GQRRKSSVSLSTTKLQELITEKIINQVTQRRNSIS 434

Query: 374 GMMK 385
              K
Sbjct: 435 SNQK 438


>SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +3

Query: 6   RKQMFNPHLSQGADPQGSHPTVIQMMIMTKNLITLSHQH-----HRLILIQTVTPKAMHP 170
           R++   P + Q    Q     +  M +M +NL  ++ QH        +L ++  P+AM  
Sbjct: 189 RERFLQPVIEQSLMQQSEIGVISTMALMRRNLSLITSQHLLKEFSMFLLGESKKPEAMSD 248

Query: 171 RAETRLRSRLPQM 209
             E +LR +L ++
Sbjct: 249 TGEHKLRQKLIEL 261


>SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20)
          Length = 610

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 209 EESKETEP-KRSETRKTLKVLDRRRKKIPSVSQRKV 313
           +++KE +  K  E    LKVLD  RKK+ SV  ++V
Sbjct: 27  QKAKEKQKAKAKEVNDPLKVLDPARKKLSSVESQRV 62


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 191  KQASSDEESKETEPKRSETRKTLKVLDRRRKKI 289
            ++AS D+  ++ E  R  TRKT+  L  + KK+
Sbjct: 1951 EKASKDDAKEQNEENRERTRKTIGELQAKVKKL 1983


>SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066)
          Length = 731

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +1

Query: 397 DEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIELSYA*RDVLRLNDLHLREK*LEF 576
           +EE R       EKE++QE  K+ ++ D +     I+++Y     L    +  + K LE 
Sbjct: 3   EEEIRRICQGKEEKEKDQETQKQAKKEDQVSDPQPIKITYDVMAALDAGKMKKKSK-LEH 61

Query: 577 ERPGNG 594
            +  NG
Sbjct: 62  TQSSNG 67


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +2

Query: 191 KQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMTQLTLK 358
           K+   DE+ +  + K+ + +K  K ++   KK+   ++  VK   ++Q + QL L+
Sbjct: 390 KEGDEDEDGEGGDKKKKKKKKKKKGVEEEEKKVKKPNKALVK--QMQQQLEQLKLE 443


>SB_42321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 185 PPKQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRK 310
           PP   +  + SKE +    +  +T K   +R+ + P  SQRK
Sbjct: 378 PPMSTNDGDTSKENQQLLHKCAQTQKKKAKRKNQRPKTSQRK 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,876,661
Number of Sequences: 59808
Number of extensions: 236522
Number of successful extensions: 1022
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)