Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1498
(716 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87440-1|BAA13382.2| 702|Homo sapiens KIAA0252 protein. 71 4e-12
BC015052-1|AAH15052.1| 585|Homo sapiens Rtf1, Paf1/RNA polymera... 71 4e-12
BC089391-1|AAH89391.1| 466|Homo sapiens CCDC19 protein protein. 30 7.2
AL591662-1|CAH72029.1| 760|Homo sapiens transmembrane channel-l... 30 7.2
AL590662-1|CAI15164.1| 760|Homo sapiens transmembrane channel-l... 30 7.2
AL590560-10|CAH71107.1| 551|Homo sapiens coiled-coil domain con... 30 7.2
AL162416-1|CAH72129.1| 760|Homo sapiens transmembrane channel-l... 30 7.2
AF094758-1|AAD55817.1| 386|Homo sapiens nasopharyngeal epitheli... 30 7.2
AF417578-1|AAL86399.1| 760|Homo sapiens transmembrane channel-l... 30 9.5
>D87440-1|BAA13382.2| 702|Homo sapiens KIAA0252 protein.
Length = 702
Score = 70.9 bits (166), Expect = 4e-12
Identities = 31/45 (68%), Positives = 40/45 (88%)
Frame = +1
Query: 373 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIE 507
GY E+LMGDEEDRARL M+EKEREQE+F RIE+R+++K R+EI+
Sbjct: 173 GYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIK 217
>BC015052-1|AAH15052.1| 585|Homo sapiens Rtf1, Paf1/RNA polymerase
II complex component, homolog (S. cerevisiae) protein.
Length = 585
Score = 70.9 bits (166), Expect = 4e-12
Identities = 31/45 (68%), Positives = 40/45 (88%)
Frame = +1
Query: 373 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEIE 507
GY E+LMGDEEDRARL M+EKEREQE+F RIE+R+++K R+EI+
Sbjct: 56 GYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIK 100
>BC089391-1|AAH89391.1| 466|Homo sapiens CCDC19 protein protein.
Length = 466
Score = 30.3 bits (65), Expect = 7.2
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Frame = +1
Query: 382 ENLMGDEEDRARLAAMSEKEREQ--EIFKRIERRDL--MKTRWEIELSYA*RDVLRLNDL 549
E + ++E+R+ LA E+E+EQ E ++++ DL M+ R + +L ++ R+ND
Sbjct: 178 EQMEKNQEERSLLAEQREQEKEQMLEYMEQLQEEDLKDMERRQQQKLKMQ-AEIKRINDE 236
Query: 550 HLREK 564
+ ++K
Sbjct: 237 NQKQK 241
>AL591662-1|CAH72029.1| 760|Homo sapiens transmembrane channel-like
1 protein.
Length = 760
Score = 30.3 bits (65), Expect = 7.2
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 206 DEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMTQLTLKRNLMMGMMK 385
+E+ E EP+ ETRK + +RRR+ + ++ + + +L KR ++ +
Sbjct: 50 NEDDPEPEPEDEETRKA-REKERRRRLKRGAEEEEIDEEELERLKAELDEKRQIIATVKC 108
Query: 386 I*WVM-KRIELV 418
W M K+IE++
Sbjct: 109 KPWKMEKKIEVL 120
>AL590662-1|CAI15164.1| 760|Homo sapiens transmembrane channel-like
1 protein.
Length = 760
Score = 30.3 bits (65), Expect = 7.2
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 206 DEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMTQLTLKRNLMMGMMK 385
+E+ E EP+ ETRK + +RRR+ + ++ + + +L KR ++ +
Sbjct: 50 NEDDPEPEPEDEETRKA-REKERRRRLKRGAEEEEIDEEELERLKAELDEKRQIIATVKC 108
Query: 386 I*WVM-KRIELV 418
W M K+IE++
Sbjct: 109 KPWKMEKKIEVL 120
>AL590560-10|CAH71107.1| 551|Homo sapiens coiled-coil domain
containing 19 protein.
Length = 551
Score = 30.3 bits (65), Expect = 7.2
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Frame = +1
Query: 382 ENLMGDEEDRARLAAMSEKEREQ--EIFKRIERRDL--MKTRWEIELSYA*RDVLRLNDL 549
E + ++E+R+ LA E+E+EQ E ++++ DL M+ R + +L ++ R+ND
Sbjct: 263 EQMEKNQEERSLLAEQREQEKEQMLEYMEQLQEEDLKDMERRQQQKLKMQ-AEIKRINDE 321
Query: 550 HLREK 564
+ ++K
Sbjct: 322 NQKQK 326
>AL162416-1|CAH72129.1| 760|Homo sapiens transmembrane channel-like
1 protein.
Length = 760
Score = 30.3 bits (65), Expect = 7.2
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 206 DEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMTQLTLKRNLMMGMMK 385
+E+ E EP+ ETRK + +RRR+ + ++ + + +L KR ++ +
Sbjct: 50 NEDDPEPEPEDEETRKA-REKERRRRLKRGAEEEEIDEEELERLKAELDEKRQIIATVKC 108
Query: 386 I*WVM-KRIELV 418
W M K+IE++
Sbjct: 109 KPWKMEKKIEVL 120
>AF094758-1|AAD55817.1| 386|Homo sapiens nasopharyngeal epithelium
specific protein 1 protein.
Length = 386
Score = 30.3 bits (65), Expect = 7.2
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Frame = +1
Query: 382 ENLMGDEEDRARLAAMSEKEREQ--EIFKRIERRDL--MKTRWEIELSYA*RDVLRLNDL 549
E + ++E+R+ LA E+E+EQ E ++++ DL M+ R + +L ++ R+ND
Sbjct: 125 EQMEKNQEERSLLAEQREQEKEQMLEYMEQLQEEDLKDMERRQQQKLKMQ-AEIKRINDE 183
Query: 550 HLREK 564
+ ++K
Sbjct: 184 NQKQK 188
>AF417578-1|AAL86399.1| 760|Homo sapiens transmembrane channel-like
protein 1 protein.
Length = 760
Score = 29.9 bits (64), Expect = 9.5
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 206 DEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMTQLTLKRNLMMGMMK 385
+E+ E EP+ ETRK + +RRR+ + ++ + + +L KR ++ +
Sbjct: 50 NEDDPEPEPEDEETRKA-REKERRRRLKRGAEKEEIDEEELERLKAELDEKRQIIATVKC 108
Query: 386 I*WVM-KRIELV 418
W M K+IE++
Sbjct: 109 KPWKMEKKIEVL 120
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,452,489
Number of Sequences: 237096
Number of extensions: 1194199
Number of successful extensions: 12928
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12889
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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