Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1498
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81101-7|CAB03200.1|  613|Caenorhabditis elegans Hypothetical pr...    44   1e-04
Z70752-6|CAA94759.1|  613|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    31   0.62 
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    31   0.62 
AF067608-6|AAC17648.2|  194|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC024817-28|AAY86305.1|  103|Caenorhabditis elegans Hypothetical...    29   3.3  
AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    28   5.8  
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical...    28   5.8  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      28   5.8  
Z75550-10|CAA99927.2|  444|Caenorhabditis elegans Hypothetical p...    28   7.7  
AF067608-7|AAM15538.1|  205|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z81101-7|CAB03200.1|  613|Caenorhabditis elegans Hypothetical
           protein F25B3.6 protein.
          Length = 613

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/42 (47%), Positives = 30/42 (71%)
 Frame = +1

Query: 379 DENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 504
           D++L  D+ED+AR   ++E E+EQEIF+R+E R+    R EI
Sbjct: 78  DDDLFADKEDKARWKKLTELEKEQEIFERMEARENAIAREEI 119


>Z70752-6|CAA94759.1|  613|Caenorhabditis elegans Hypothetical
           protein F25B3.6 protein.
          Length = 613

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/42 (47%), Positives = 30/42 (71%)
 Frame = +1

Query: 379 DENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 504
           D++L  D+ED+AR   ++E E+EQEIF+R+E R+    R EI
Sbjct: 78  DDDLFADKEDKARWKKLTELEKEQEIFERMEARENAIAREEI 119


>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 200  SSDEESKETEPKRSETRKTLKVLDRRRKKI 289
            SSDE  KE EP  S T+K  K+    RK I
Sbjct: 966  SSDESDKEEEPSCSNTKKQAKMAGNERKTI 995


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 200  SSDEESKETEPKRSETRKTLKVLDRRRKKI 289
            SSDE  KE EP  S T+K  K+    RK I
Sbjct: 966  SSDESDKEEEPSCSNTKKQAKMAGNERKTI 995


>AF067608-6|AAC17648.2|  194|Caenorhabditis elegans Hypothetical
           protein B0511.9a protein.
          Length = 194

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 209 EESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMT 343
           E   ++EP R  TR+ L+  DR+ + +P  S  +     I  T+T
Sbjct: 47  EPMDQSEPPRGITRRNLRSADRKNRDVPGPSTGECTRTSIAPTLT 91


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 185 PPKQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQ 304
           P ++  S  +SK   PKR+++R        RR++ PS S+
Sbjct: 316 PARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASK 355


>AC024817-28|AAY86305.1|  103|Caenorhabditis elegans Hypothetical
           protein Y54G2A.49 protein.
          Length = 103

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = +2

Query: 203 SDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRK 310
           SD E K+T+ K+ + RKT K   RR+KK PS   RK
Sbjct: 22  SDSE-KKTKMKKKKRRKTKKHRKRRKKK-PSRGSRK 55


>AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical
           protein T08D2.5 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 279 LLRSSTFNVFLVSDLFGSVSFDSSSEEAC 193
           LL +STF  +L S  F S S  S+S E C
Sbjct: 270 LLNTSTFTSWLQSSSFSSASSSSTSSEQC 298


>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 99  LITLSHQHHRLILIQTVTPKAMHPRAETRLRSRLPQMKSRRRQSQRDLKP 248
           ++ L H H     + T+T +   P++ T LR    Q+K R R  Q+  KP
Sbjct: 340 VVRLVHDH----TLGTITQQPYVPKSGTSLRQVREQLKDRARGEQKTKKP 385


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
 Frame = +1

Query: 397  DEEDRARLAAM--SEKEREQEIFKRIERRDLMKTRWEIELSYA*RDVLRLNDLHLRE--- 561
            +EE++ RL  +  +E+EREQE  KR E  +  +     E      ++ + N+  L+E   
Sbjct: 1192 EEEEKMRLERLRKAEREREQERLKREEEEERKRLEQLREAEKLKAEIEKENERKLQEERT 1251

Query: 562  -K*LEFER 582
             K LE ER
Sbjct: 1252 RKALELER 1259


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
 Frame = +1

Query: 397  DEEDRARLAAM--SEKEREQEIFKRIERRDLMKTRWEIELSYA*RDVLRLNDLHLRE--- 561
            +EE++ RL  +  +E+EREQE  KR E  +  +     E      ++ + N+  L+E   
Sbjct: 1192 EEEEKMRLERLRKAEREREQERLKREEEEERKRLEQLREAEKLKAEIEKENERKLQEERT 1251

Query: 562  -K*LEFER 582
             K LE ER
Sbjct: 1252 RKALELER 1259


>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
           protein Y116A8C.36 protein.
          Length = 1097

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 397 DEEDRARLAAMSEKEREQEIFKRIERRD 480
           +EE++ R A + +KERE+E  K  ER++
Sbjct: 314 EEEEQRRRAEVEKKEREEEAKKNRERQE 341


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
 Frame = +1

Query: 397  DEEDRARLAAM--SEKEREQEIFKRIERRDLMKTRWEIELSYA*RDVLRLNDLHLRE--- 561
            +EE++ RL  +  +E+EREQE  KR E  +  +     E      ++ + N+  L+E   
Sbjct: 1192 EEEEKMRLERLRKAEREREQERLKREEEEERKRLEQLREAEKLKAEIEKENERKLQEERT 1251

Query: 562  -K*LEFER 582
             K LE ER
Sbjct: 1252 RKALELER 1259


>Z75550-10|CAA99927.2|  444|Caenorhabditis elegans Hypothetical
           protein T22C1.11 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +2

Query: 194 QASSDEESKETEPKRSETRKTLKVLDRRRKK 286
           QA+SDE++++TE +R + R   K  +R+RKK
Sbjct: 128 QAASDEKTRQTEIRREKDR-IRKRRERQRKK 157


>AF067608-7|AAM15538.1|  205|Caenorhabditis elegans Hypothetical
           protein B0511.9b protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 209 EESKETEPKRSETRKTLKVLDRRRKKIPSVS 301
           E   ++EP R  TR+ L+  DR+ + +P  S
Sbjct: 47  EPMDQSEPPRGITRRNLRSADRKNRDVPGPS 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,095,277
Number of Sequences: 27780
Number of extensions: 180443
Number of successful extensions: 781
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)