Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1498
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.31 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +2

Query: 203 SDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMTQLTLKRNLMM 373
           SD+ S   +   S  R  +++LD  R +I  + Q     L +RQ + +L L+RN ++
Sbjct: 196 SDDGSDGNDGDESSCRADIRILDLSRNEITRL-QENSPLLDLRQ-LQELHLQRNAIV 250


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 194 QASSDEESKETEPKRSE 244
           + SSDEE  +T P + E
Sbjct: 318 ETSSDEEEADTRPLKKE 334


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 186 LRSRLPQMKSRRRQSQRDLKPG 251
           LR+R  + ++ R+ +  D+KPG
Sbjct: 370 LRNRARKARANRKPNLGDIKPG 391


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 397 DEEDRARLAAMSEKEREQ 450
           +E+ R  +  M E+EREQ
Sbjct: 62  NEQQRKEMEQMREREREQ 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,078
Number of Sequences: 438
Number of extensions: 2504
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)