Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1498
(716 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61040.1 68414.m06872 plus-3 domain-containing protein contai... 30 1.3
At4g39160.1 68417.m05546 myb family transcription factor contain... 29 2.3
At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family pr... 29 3.1
At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family pr... 29 3.1
At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM do... 29 4.1
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron... 28 5.4
At3g52115.1 68416.m05720 hypothetical protein 28 7.1
At3g08740.1 68416.m01016 elongation factor P (EF-P) family prote... 28 7.1
At4g28360.1 68417.m04059 ribosomal protein L22 family protein 27 9.4
At2g47260.1 68415.m05901 WRKY family transcription factor contai... 27 9.4
At2g37100.1 68415.m04552 protamine P1 family protein contains Pf... 27 9.4
At1g52370.1 68414.m05910 ribosomal protein L22 family protein s... 27 9.4
At1g20400.1 68414.m02544 myosin heavy chain-related 27 9.4
At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger) fa... 27 9.4
>At1g61040.1 68414.m06872 plus-3 domain-containing protein contains
Pfam profile PF03126: Plus-3 domain
Length = 643
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +1
Query: 376 YDENLMGDEEDRARLAAMSEKEREQEIFKRIERR 477
+ ++L +EEDR +LA M+E +RE + +R +++
Sbjct: 99 FGDDLYKNEEDRQKLAGMTEFQREMILSERADKK 132
>At4g39160.1 68417.m05546 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 545
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 194 QASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMT 343
+ S ESK + KR+ +RK K + K Q+K K+ RQ T
Sbjct: 240 EEQSKRESKTGKSKRATSRKRKKTSEEPNKSSEKTEQKKFKHSSRRQKRT 289
>At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 307
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 144 TVTPKAMHPRAETRLRSRLPQMKSRRRQSQRDLKPGRH 257
T +P + H R + ++ LPQ +R ++ +R KP ++
Sbjct: 81 TSSPLSAHSRRKRKINHLLPQEMTREKRKRRKTKPSKN 118
>At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 358
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 144 TVTPKAMHPRAETRLRSRLPQMKSRRRQSQRDLKPGRH 257
T +P + H R + ++ LPQ +R ++ +R KP ++
Sbjct: 132 TSSPLSAHSRRKRKINHLLPQEMTREKRKRRKTKPSKN 169
>At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM
domain-containing protein low similarity to polyamine
oxidase isoform-1 [Homo sapiens] GI:14860862; contains
Pfam profiles PF01593: amine oxidase flavin-containing,
PF04433: SWIRM domain
Length = 1265
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 175 QRLASEAGFLR*RVEGDRAKEI*NQEDIESAGSEKEKDTFSE 300
Q+ ASE G L + G + E +E+ SEKE D F +
Sbjct: 139 QKCASETGTLLHKFSGKDKAASPSHEKVETVSSEKEADVFHQ 180
>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +2
Query: 191 KQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMTQLTLKR 361
K+A +EE+K EP + ++ K + + P+ ++K K H + T++ K+
Sbjct: 464 KKADDEEEAKTEEPSKKKSNKKKTEAEPETAEEPAKKEKKKKRKH-EEEETEMPAKK 519
>At3g52115.1 68416.m05720 hypothetical protein
Length = 588
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +2
Query: 191 KQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVK 316
K+ SD+E+++ PK S +R+ +++ + +K V + K
Sbjct: 481 KKDDSDDETQDMNPKPSPSRQRIQIAETSKKSFKHVESVRKK 522
>At3g08740.1 68416.m01016 elongation factor P (EF-P) family protein
similar to SP|P33398 Elongation factor P (EF-P)
{Escherichia coli O157:H7}; contains Pfam profile
PF01132: Elongation factor P (EF-P)
Length = 236
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 453 DFQTYREKRFNEN*MGDRTK 512
D TY E R NE+ MG++TK
Sbjct: 135 DLTTYEETRLNESDMGEKTK 154
>At4g28360.1 68417.m04059 ribosomal protein L22 family protein
Length = 271
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 185 PPKQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMTQL--TLK 358
P S EE ++ PKR + + LK + + KK+ V+ V+ + + + QL T+K
Sbjct: 87 PALLGSGKEEEQKIIPKRQKVQAVLKSIKQSPKKVNLVA-ALVRGMRVEDALIQLQVTVK 145
Query: 359 R 361
R
Sbjct: 146 R 146
>At2g47260.1 68415.m05901 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 337
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 188 PKQASSDEESKETEPKRSETRKTLKVLDRRRKK 286
PK ++EE E + ++S T+K LK +K+
Sbjct: 124 PKTEDNEEEGGEDQQEKSHTKKQLKAKKNNQKR 156
>At2g37100.1 68415.m04552 protamine P1 family protein contains Pfam
PF00260: Protamine P1
Length = 297
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 191 KQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRK 310
+ ASS+ S EPK S T T ++ D RR+ S ++
Sbjct: 221 RHASSENVSVSEEPKTSVTETTERLEDSRRESAASEEPKR 260
>At1g52370.1 68414.m05910 ribosomal protein L22 family protein
similar to GB:Z67753 from [Odontella sinensis]
Length = 269
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 185 PPKQASSDEESKETEPKRSETRKTLKVLDRRRKKIPSVSQRKVKYLHIRQTMTQL--TLK 358
P S EE ++ PKR + + LK + + KK+ V+ V+ + + + QL T+K
Sbjct: 86 PALLGSGKEEEQKIIPKRQKVQAVLKSIKQSPKKVNLVA-ALVRGMRVEDALMQLQVTVK 144
Query: 359 R 361
R
Sbjct: 145 R 145
>At1g20400.1 68414.m02544 myosin heavy chain-related
Length = 944
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 376 YDENLMGDEEDRARLAAMSEKEREQEIFKRI--ERRDLMKTRWEIELSYA*RDVLRLNDL 549
Y +MG+E DR L E+E+ E+ R+ E++ L R + + + ++ + DL
Sbjct: 745 YQRTVMGEERDRCTLDLEKEREKTVELEDRLKSEKKRLRSRREKYAENQTSKALIHVADL 804
>At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 634
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 69 VIQMMIMTKNLITLSHQHHRLILIQTVTPKAMHPRAETRLRSRLPQMKSRRR 224
+ + M +N + S + ++ A +PR +RL +RL Q SRRR
Sbjct: 423 IARSMEQEENSLRASSSRASTRITRSSNTIAANPRGRSRLEARLQQHSSRRR 474
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,634,500
Number of Sequences: 28952
Number of extensions: 171412
Number of successful extensions: 677
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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