Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1491
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    24   1.1  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    24   1.1  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   4.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   4.5  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -1

Query: 201 EVAGDSAEEDEDQGMGDANMDGEPQQNGASDEEDDN 94
           E++ D AEE++ +  G+     +P+     ++ED++
Sbjct: 222 ELSDDEAEEEKKEEEGEDKDKDKPKIEDVGEDEDED 257



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = -1

Query: 267 SGDSADEAELARQMERAEAENAEVAGDSAEEDEDQGMGDANMDGEPQQNGASDEE 103
           S D A+E +   + E  + +  ++     +EDED    D       ++    DEE
Sbjct: 224 SDDEAEEEKKEEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEKYTEDEE 278


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 189 DSAEEDEDQGMGDANMDG--EPQQNGASDEEDD 97
           D  E+DE+    D +M G  + ++NG   ++DD
Sbjct: 168 DDREKDEEDKRDDTDMHGRIKSERNGKDLDDDD 200



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/56 (21%), Positives = 23/56 (41%)
 Frame = -2

Query: 251 TRQSWPDRWNARRLKTLKSLVILPRKTRIKVWAMLTWMVNRNRTALRTKKTTIDNK 84
           T ++W +        T    ++L   T++ +  + TW  N  R   +  K T + K
Sbjct: 98  TLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPK 153


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 234 GPTLPRLRCHHFRRHLN 284
           G    RL  H+F RHLN
Sbjct: 390 GEQFARLLRHNFNRHLN 406


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 234 GPTLPRLRCHHFRRHLN 284
           G    RL  H+F RHLN
Sbjct: 397 GEQFARLLRHNFNRHLN 413


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,931
Number of Sequences: 336
Number of extensions: 3174
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)