Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1491
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su... 90 3e-19
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 40 4e-04
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 32 0.074
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 31 0.17
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 28 1.6
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 2.8
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 27 2.8
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni... 27 3.7
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 26 4.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 4.8
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun... 26 6.4
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 25 8.5
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 25 8.5
>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 89.8 bits (213), Expect = 3e-19
Identities = 39/81 (48%), Positives = 61/81 (75%)
Frame = -2
Query: 500 CYGYEGIDAVRAALKAGLALSTVDMPIKINLIAPPLYVMTTSTPEKTDGLKALQDAIDKI 321
C+GYEGI+A++AALKA + T ++PIK+ L+APPLYV+ T+ +K+ GLK L++AI I
Sbjct: 193 CFGYEGINAIKAALKAAEDVHTEEVPIKVKLVAPPLYVLLTNALDKSLGLKKLEEAIGAI 252
Query: 320 QENITEAGGVFNIQMAPKVVT 258
+++IT + G ++M PK V+
Sbjct: 253 EKSITASNGTCTVKMKPKAVS 273
Score = 34.7 bits (76), Expect = 0.014
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -1
Query: 252 DEAELARQMERAEAENAEVAGDSAEEDEDQG 160
DE ELA M++ E ENAE++GD EED+ G
Sbjct: 276 DELELADLMKKFEKENAEISGD--EEDDQSG 304
Score = 31.9 bits (69), Expect = 0.098
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -3
Query: 568 LLANIKRKLTSQAVKIRADISV 503
LLA I R+LT Q +KIRAD+ V
Sbjct: 170 LLAQISRRLTPQPIKIRADVEV 191
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 39.9 bits (89), Expect = 4e-04
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -1
Query: 261 DSADEAELARQMERAEAENAEVAGDSAEEDEDQGMGD--ANMDGEPQQNGASDEEDD 97
D +E E A +ME E E GD EE+ED G GD + DGE + +G EE++
Sbjct: 175 DEEEEEEEADEMEEEFDEEGE--GDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEE 229
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 32.3 bits (70), Expect = 0.074
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = -1
Query: 282 SDGA*SGDSADEAELARQMERAEAENAEVAGDSAEEDEDQGMG 154
S GA S +A A A E AE E E A + E DED G G
Sbjct: 64 SAGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFG 106
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 31.1 bits (67), Expect = 0.17
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 261 DSADEAELARQMERAEAENAEVAGDSAEEDED---QGMGDANMDGEPQQNGASDEEDDN 94
D DE L+R+M R + E A DS +++ D Q M D Q +SDE+DD+
Sbjct: 718 DGNDEDPLSREMSRRLS--FESANDSDQDNRDHFAQYMSQQISDNNANQFSSSDEDDDD 774
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 156 GDANMDGEPQQNGASDEEDDN 94
GD N DG P +NG DDN
Sbjct: 14 GDKNEDGYPAENGEGTNVDDN 34
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 183 AEEDEDQGMGDANMDGEPQQNGASDEEDDN 94
AE DED+ DA G + SD+E D+
Sbjct: 203 AESDEDEDFDDAPTKGSRHKRIVSDDESDD 232
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -1
Query: 267 SGDSADEAELARQMERAEAENAEVAGDSAEEDED---QGMGDANMDGEPQQNGASDEEDD 97
S S E ++ E EN E AGD EE+E Q G DG + +D+ +D
Sbjct: 1334 SDTSESEVGSKDDVQSEEVENLESAGDEDEEEEPSALQANGFDWTDGSTVFDKLADDTED 1393
Query: 96 N 94
+
Sbjct: 1394 S 1394
>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 13 HVLFLYYI*NTLDYRVTIYYDIKVLLSIVVFFVRSAVLLRFTIHVSI 153
H + LYY+ T+ YRVT +D++ S + + +L F ++ I
Sbjct: 5 HKVILYYVSLTILYRVTYLFDLEEPWSTLRPYTPYLFILAFGSYLGI 51
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 225 ERAEAENAEVAGDSAEEDEDQGMGDANMDGEPQQNGASDEEDDN 94
E +E+ E S E ED+ D + + + ++N DE+ +N
Sbjct: 677 ETSESSEGEYE-TSTSESEDEETDDTSQEEDNEKNSTPDEDTEN 719
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 432 HCRQS*TSFQSCSY-SINAFITIASTLMSARIFTACEVSFLL 554
+CR+ S CS NA TIA T++S + +A +FLL
Sbjct: 232 NCRRRYQSSAKCSVPGFNALGTIAETVLSKSLNSARMATFLL 273
>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = -1
Query: 243 ELARQMERAEAENAEVAGDSAEEDEDQGMG--DANMDGEPQ-QNGASDEEDD 97
+L + A N E D E+ED+ G D N GE NG D+ DD
Sbjct: 149 DLKDESSEAAHPNIEEEPDEGLEEEDEDFGDDDDNDYGENYFDNGEGDDYDD 200
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = -1
Query: 267 SGDSADEAELARQMERAEAENAEVAGDSAEEDEDQGMGDANMDGEPQQNGASDEEDD 97
S D+A E + AEN + G++ + ++ + + Q++ D+EDD
Sbjct: 134 SSDTASVKE-TENSDPKSAENEVLEGETTQHSNNKEAHPNTEENKEQEDNEEDDEDD 189
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 153 RPYLDPRLPRQNHQRLQRFQPPRVP 227
RP P Q++ + ++QPPR+P
Sbjct: 21 RPNYSPNNGSQSNNTVHQYQPPRMP 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,259
Number of Sequences: 5004
Number of extensions: 50887
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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