Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1487
         (674 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    81   2e-14
UniRef50_Q23QR7 Cluster: Putative uncharacterized protein; n=1; ...    33   8.4  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 81.0 bits (191), Expect = 2e-14
 Identities = 39/60 (65%), Positives = 46/60 (76%)
 Frame = +1

Query: 22  FYQVLADPADFVVPRPINKRPKLLNKIDLKQTKGIRPTGDIS*EKQNCVLFIEIREFSYL 201
           F  +LADPADFVVP+ INKRPK L KI+LKQTKGIR TGD S EKQNC  ++  R F ++
Sbjct: 18  FMIILADPADFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEKQNCYFYLIPRIFIFI 77


>UniRef50_Q23QR7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1357

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
 Frame = +1

Query: 88  LLNKIDLKQTKGIRPTGDIS*EKQNCVLFIEIREFSYLSTF*TFSGLSQIIQDQNYQIGP 267
           +LNK+++ QT   +    ++ +  N  +  ++ EF+ LS+  T + +  I QDQ  +   
Sbjct: 351 VLNKVNILQTASFQYYYILNLQNLNNDINFQLNEFNMLSSNWT-NTMLYIYQDQQSEKSQ 409

Query: 268 AVLARLTNSNSF-L*IYIYIFSKF*TLN 348
            ++  + NSN   L   +++F+++ TLN
Sbjct: 410 YIMINMKNSNYIGLFPLLFMFAQYVTLN 437


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,263,214
Number of Sequences: 1657284
Number of extensions: 9250010
Number of successful extensions: 19418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19411
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)