Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1487
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    28   1.1  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.7  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   5.7  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   10.0 
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    25   10.0 
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    25   10.0 

>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -2

Query: 154 FPMICPPSDEFLLFVLSLFYSIV*VFYLSVE---ALRSLPGQLVPD 26
           +P   PP + FL F  +   S++ + +LSVE    +RSLP  L+ +
Sbjct: 139 YPSYLPPCEVFLDFTSTCTVSLIGMQHLSVEHDAKMRSLPNPLLEE 184


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 162 ILFFL*YVPRRTNSFCLF 109
           ++FFL  VP+ T SFC+F
Sbjct: 261 LIFFLNLVPKPTVSFCVF 278


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 165 TILFFL*YVPRR--TNSFCLF*VYFIQ*FRSFIYRSRHYEVCRVS 37
           T++++L   P    T++ C+F ++F+   R+     RH   C +S
Sbjct: 324 TLMYYLIIAPTLLITSAICMFTIFFVPCARTLWAICRHLRTCPLS 368


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 365 EFVEEPFKV*NLENIYIYIYKNELLFVSLAKTAGPI 258
           E  EEP K+   EN+ +YIY +  + +S  + + PI
Sbjct: 75  EISEEPQKLFQEENVKVYIY-DSAISLSSVRASFPI 109


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 349 GSSTNSQKGRLNQTTAFTYRIVLISKIYFIFR*INKV 459
           GS+TN     +N   A+   IVLI+ +  IF  I  V
Sbjct: 29  GSATNYNSNWVNYKGAWVIHIVLIAALRLIFHAIPSV 65


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 452 TKSTIRGLTFLFTLAGAILNLPRLYQIRD 538
           TK   RGL F+   A A +  P+L+Q RD
Sbjct: 451 TKKLTRGLMFMVGYAIANIISPQLWQSRD 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,059
Number of Sequences: 5004
Number of extensions: 43077
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)