BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbVm1487 (674 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi... 28 1.1 SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.7 SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 5.7 SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 10.0 SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch... 25 10.0 SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 25 10.0 >SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 314 Score = 28.3 bits (60), Expect = 1.1 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Frame = -2 Query: 154 FPMICPPSDEFLLFVLSLFYSIV*VFYLSVE---ALRSLPGQLVPD 26 +P PP + FL F + S++ + +LSVE +RSLP L+ + Sbjct: 139 YPSYLPPCEVFLDFTSTCTVSLIGMQHLSVEHDAKMRSLPNPLLEE 184 >SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 589 Score = 25.8 bits (54), Expect = 5.7 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -3 Query: 162 ILFFL*YVPRRTNSFCLF 109 ++FFL VP+ T SFC+F Sbjct: 261 LIFFLNLVPKPTVSFCVF 278 >SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1|||Manual Length = 881 Score = 25.8 bits (54), Expect = 5.7 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -3 Query: 165 TILFFL*YVPRR--TNSFCLF*VYFIQ*FRSFIYRSRHYEVCRVS 37 T++++L P T++ C+F ++F+ R+ RH C +S Sbjct: 324 TLMYYLIIAPTLLITSAICMFTIFFVPCARTLWAICRHLRTCPLS 368 >SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 430 Score = 25.0 bits (52), Expect = 10.0 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 365 EFVEEPFKV*NLENIYIYIYKNELLFVSLAKTAGPI 258 E EEP K+ EN+ +YIY + + +S + + PI Sbjct: 75 EISEEPQKLFQEENVKVYIY-DSAISLSSVRASFPI 109 >SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 186 Score = 25.0 bits (52), Expect = 10.0 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 349 GSSTNSQKGRLNQTTAFTYRIVLISKIYFIFR*INKV 459 GS+TN +N A+ IVLI+ + IF I V Sbjct: 29 GSATNYNSNWVNYKGAWVIHIVLIAALRLIFHAIPSV 65 >SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr 3|||Manual Length = 570 Score = 25.0 bits (52), Expect = 10.0 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 452 TKSTIRGLTFLFTLAGAILNLPRLYQIRD 538 TK RGL F+ A A + P+L+Q RD Sbjct: 451 TKKLTRGLMFMVGYAIANIISPQLWQSRD 479 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,289,059 Number of Sequences: 5004 Number of extensions: 43077 Number of successful extensions: 98 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 98 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 309878492 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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