Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1487
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55420| Best HMM Match : fn3 (HMM E-Value=0)                         31   0.85 
SB_15578| Best HMM Match : SBF (HMM E-Value=0.027)                     28   7.9  
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_55420| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 789

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 519 VYIKFVIILVVTFAIAFANNITVVTFAII--TFANTGPDADRI 641
           + I  +II+++   I   NN  ++T  II  T  +TGP A R+
Sbjct: 550 IIINSIIIIIIIIIIIIINNNNIITIIIINSTIKSTGPTALRV 592


>SB_15578| Best HMM Match : SBF (HMM E-Value=0.027)
          Length = 431

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 231 TNNSRPKLPNRSSRFSETNE 290
           TNNS+P +PNR +RF    +
Sbjct: 14  TNNSQPDVPNRPTRFQRIRQ 33


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 16  GAFYQVLADPADFVVPRPINKRPKLLNKIDLKQTKGIRPTGD 141
           GAFY+V+    D      +N+ P+ LN + L + + + P+ D
Sbjct: 561 GAFYKVVLPDDDMSSSNEMNELPEHLNNLVLSKLELLHPSKD 602


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,820,554
Number of Sequences: 59808
Number of extensions: 266805
Number of successful extensions: 498
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)