Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1487
         (674 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   5.0  
Y08163-1|CAA69355.1|  192|Anopheles gambiae hypothetical protein...    23   6.7  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   6.7  

>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 99  NRLKTNKRNSSDGGHIIGKTKLCSFY*NPRIFIFIYLLNLLW 224
           NRLKT ++ S D    +   +L   Y      +F  L NLLW
Sbjct: 510 NRLKTVEQASFDNNTKLQAIRLDGNYLTDIAGLFTKLPNLLW 551


>Y08163-1|CAA69355.1|  192|Anopheles gambiae hypothetical protein
           protein.
          Length = 192

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 378 LKPNNSFHLSNCINL*NIF 434
           L P  S+ L NC+N  NIF
Sbjct: 166 LTPTGSWTLRNCLNPLNIF 184


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 383 FKRPFCEFVEEPFKV*NLENIY 318
           FKR F +++    K  ++ENIY
Sbjct: 219 FKRQFSKYISLGIKADDIENIY 240


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,084
Number of Sequences: 2352
Number of extensions: 9646
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67741110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)