Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1483
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   115   5e-27
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   115   5e-27
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   115   5e-27
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    41   1e-04
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   5.8  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    25   5.8  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   7.6  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  115 bits (276), Expect = 5e-27
 Identities = 49/71 (69%), Positives = 59/71 (83%)
 Frame = +3

Query: 9   DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           DCHTAHIACKFAE+ EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PL
Sbjct: 360 DCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPL 419

Query: 189 GRFAVPDMRHT 221
           GRFAV DMR T
Sbjct: 420 GRFAVRDMRQT 430


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  115 bits (276), Expect = 5e-27
 Identities = 49/71 (69%), Positives = 59/71 (83%)
 Frame = +3

Query: 9   DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           DCHTAHIACKFAE+ EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PL
Sbjct: 360 DCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPL 419

Query: 189 GRFAVPDMRHT 221
           GRFAV DMR T
Sbjct: 420 GRFAVRDMRQT 430


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  115 bits (276), Expect = 5e-27
 Identities = 49/71 (69%), Positives = 59/71 (83%)
 Frame = +3

Query: 9   DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           DCHTAHIACKFAE+ EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PL
Sbjct: 360 DCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPL 419

Query: 189 GRFAVPDMRHT 221
           GRFAV DMR T
Sbjct: 420 GRFAVRDMRQT 430


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +3

Query: 15  HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 194
           HTA     FA++  K+D+ T + ++  P     G   I  L    P+C+E F+++  +GR
Sbjct: 584 HTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGR 642

Query: 195 FAVPDMRHT 221
           F + D   T
Sbjct: 643 FTLRDQGTT 651


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 78  KSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVPD 209
           +ST V P  I S  AA  +++ S+   VESF +     +  +P+
Sbjct: 284 RSTSVAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQTPIPE 327


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 127 MAASPDLMDFGLTSVDLPVRRSTFS 53
           ++ +PDL D  L+SVD P++ +T S
Sbjct: 27  LSVAPDLADVLLSSVDQPLKVNTCS 51


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 373 GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 468
           G S E     S+   IFY       FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,300
Number of Sequences: 5004
Number of extensions: 45825
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)