Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1483
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 105 2e-23
03_01_0547 + 4093196-4093657,4094267-4095148 105 2e-23
03_01_0544 + 4082528-4082989,4083585-4084466 105 2e-23
03_01_0543 + 4076981-4077442,4078145-4079026 105 2e-23
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 38 0.004
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 38 0.007
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 36 0.029
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 36 0.029
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610 30 1.5
03_02_0447 - 8576656-8576721,8577771-8577821,8577939-8578043,857... 29 2.5
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 3.4
04_03_0766 + 19384544-19384610,19384705-19384922,19385303-193853... 28 4.4
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629... 28 5.9
01_05_0423 + 22032940-22033695 27 7.7
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 105 bits (252), Expect = 2e-23
Identities = 44/71 (61%), Positives = 57/71 (80%)
Frame = +3
Query: 9 DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
DCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPL
Sbjct: 350 DCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPL 409
Query: 189 GRFAVPDMRHT 221
GRFAV DMR T
Sbjct: 410 GRFAVRDMRQT 420
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 105 bits (252), Expect = 2e-23
Identities = 44/71 (61%), Positives = 57/71 (80%)
Frame = +3
Query: 9 DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
DCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPL
Sbjct: 350 DCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPL 409
Query: 189 GRFAVPDMRHT 221
GRFAV DMR T
Sbjct: 410 GRFAVRDMRQT 420
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 105 bits (252), Expect = 2e-23
Identities = 44/71 (61%), Positives = 57/71 (80%)
Frame = +3
Query: 9 DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
DCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPL
Sbjct: 350 DCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPL 409
Query: 189 GRFAVPDMRHT 221
GRFAV DMR T
Sbjct: 410 GRFAVRDMRQT 420
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 105 bits (252), Expect = 2e-23
Identities = 44/71 (61%), Positives = 57/71 (80%)
Frame = +3
Query: 9 DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
DCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPL
Sbjct: 350 DCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPL 409
Query: 189 GRFAVPDMRHT 221
GRFAV DMR T
Sbjct: 410 GRFAVRDMRQT 420
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Frame = +3
Query: 15 HTAHIACKFAEIKEKVDRRTGKSTEVNPKS-------IKSGDAAIVNLVPSKPLCVESFQ 173
H+ C+ ++ E++D + K + K +K+G + + + +C+E+F
Sbjct: 345 HSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICIENFS 404
Query: 174 EFPPLGRFAV 203
+FP LGRF +
Sbjct: 405 DFPQLGRFTL 414
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +3
Query: 27 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 194
++ +I ++++TGK+++ P+ + S A++ + K +CVE F LGR
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGR 632
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 35.5 bits (78), Expect = 0.029
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 15 HTAHI--ACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
H H+ A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + L
Sbjct: 596 HIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRAL 654
Query: 189 GR 194
GR
Sbjct: 655 GR 656
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 35.5 bits (78), Expect = 0.029
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 15 HTAHI--ACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
H H+ A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + L
Sbjct: 596 HIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRAL 654
Query: 189 GR 194
GR
Sbjct: 655 GR 656
>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
Length = 439
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -3
Query: 345 MKNCAVNSSSYFLPLVAFSAALVTLPPPASEXTAP-XRPREKVCASCQGQQNDRGVGIPG 169
M N++ F LVA +A+L++LPPP+ T+P RP+ + S +D G
Sbjct: 1 MAMAMTNTALAFFLLVA-AASLLSLPPPSLAVTSPYVRPKPRATLSLLKDDDD---GRKP 56
Query: 168 RTLHIEA 148
+HI A
Sbjct: 57 EQVHISA 63
>03_02_0447 -
8576656-8576721,8577771-8577821,8577939-8578043,
8578955-8579059
Length = 108
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -3
Query: 330 VNSSSYFLPLVAFSAALVTLPPPASEXTAPXRP--REKVCASCQG 202
++S +FLPL++ LV PP A P P +K CA G
Sbjct: 1 MSSLPFFLPLLSLLPHLVAAPPRAGRARRPSEPAQADKKCALFYG 45
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 457 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 377
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>04_03_0766 +
19384544-19384610,19384705-19384922,19385303-19385344,
19385696-19385755,19385926-19386006,19386126-19386275,
19386526-19386621,19387091-19387287,19387390-19387669
Length = 396
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +3
Query: 6 WDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 173
WD + C E + VDRR G + E +K D + +P+ SFQ
Sbjct: 173 WDVQSDDALCTLQEALDGVDRRVGFNVE-----LKFDDDVVFEHAKERPIFFSSFQ 223
>06_02_0131 +
12161268-12161781,12162123-12162867,12162950-12162986,
12163083-12163216,12163298-12163625
Length = 585
Score = 27.9 bits (59), Expect = 5.9
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = -3
Query: 483 RYIMYNLI*IIK*CYITSLVKNIEKE*VCSPFFLRNTFR*MKYRS-CMKNCAVNSSSYFL 307
RY+++ L ++ + L +++ +C L + + +K R C+ A N F
Sbjct: 442 RYLLFPLKRVVADILLPYL-EHVSPAELCHWLMLSDIYDVVKIREYCLDIIACNFEM-FA 499
Query: 306 PLVAFSAALVTLPPPASEXT-APXRPREKVCASCQGQQN 193
F A L+TLPPP+ + + RP E A Q N
Sbjct: 500 DTREFRALLLTLPPPSGDDSLRTTRPSEPGTAGNTDQGN 538
>01_05_0423 + 22032940-22033695
Length = 251
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 276 TLPPPASEXTAPXRPREKVCASCQGQQ 196
T PPP P P + CA+C+ Q+
Sbjct: 22 TTPPPQPPPPPPPPPHPQACAACKHQR 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,852,679
Number of Sequences: 37544
Number of extensions: 297768
Number of successful extensions: 902
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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