Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1483
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                118   2e-27
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           46   3e-05
SB_35784| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17)               31   0.49 
SB_50158| Best HMM Match : Toxin_16 (HMM E-Value=2)                    31   0.64 
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_21279| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_39582| Best HMM Match : Toxin_16 (HMM E-Value=2)                    31   0.64 
SB_30047| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)                31   0.64 
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            30   1.5  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.4  
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  
SB_45908| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)                   27   7.9  
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  118 bits (285), Expect = 2e-27
 Identities = 50/71 (70%), Positives = 61/71 (85%)
 Frame = +3

Query: 9   DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           DCHTAHIACKF ++ EK+DRR+GK  E NPK IK+GDAA+V ++PSKP+CVE+F EFPPL
Sbjct: 221 DCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPL 280

Query: 189 GRFAVPDMRHT 221
           GRFAV DM+ T
Sbjct: 281 GRFAVRDMKQT 291


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +3

Query: 60  VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVPD 209
           +D++TGK  +  P+ IK    AI  L     +C+E F +F  +GRF + D
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545


>SB_35784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 234 PREKVCASCQGQQNDRGVGIPGR 166
           PREK C  C+   ND  VG+PG+
Sbjct: 2   PREKKCPGCKKPVNDHDVGVPGK 24


>SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17)
          Length = 505

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 234 PREKVCASCQGQQNDRGVGIPGR 166
           PREK C  C+   ND+  G+PG+
Sbjct: 2   PREKKCPGCKKPVNDQDFGVPGK 24


>SB_50158| Best HMM Match : Toxin_16 (HMM E-Value=2)
          Length = 746

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 234 PREKVCASCQGQQNDRGVGIPGR 166
           PREK C  C+   ND   G+PG+
Sbjct: 294 PREKKCPGCKKPVNDHDFGVPGK 316


>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +3

Query: 24  HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 152
           HIA K  E+K   D ++ K+ ++ PK++ SGD    ++VP++P
Sbjct: 74  HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112


>SB_21279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 234 PREKVCASCQGQQNDRGVGIPGR 166
           PREK C  C+   ND   G+PG+
Sbjct: 2   PREKKCPGCKKPVNDHDFGVPGK 24


>SB_39582| Best HMM Match : Toxin_16 (HMM E-Value=2)
          Length = 169

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 234 PREKVCASCQGQQNDRGVGIPGR 166
           PREK C  C+   ND   G+PG+
Sbjct: 2   PREKKCPGCKKPVNDHDFGVPGK 24


>SB_30047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 234 PREKVCASCQGQQNDRGVGIPGR 166
           PREK C  C+   ND   G+PG+
Sbjct: 2   PREKKCPGCKKPVNDHDFGVPGK 24


>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
          Length = 726

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +3

Query: 45  EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVPDMRH 218
           EI     R TG++TE+N  ++ SG+  I  +V +   C+   Q + P    A P + H
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLYGPTN--ASPIINH 310


>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = -2

Query: 529 YSMNLHFVCSHNKMFQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEV 356
           Y++ L F+  +   +QI+Y+  Y   KI +H++  K  RK + L  FFPS  H +    +
Sbjct: 295 YAIVLIFIIGYYP-YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNI 352

Query: 355 SQL 347
           SQL
Sbjct: 353 SQL 355


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 123 AIVNLVPSKPLCVESFQEFPPLGRF 197
           A V L  S+P+CVE ++++  LGRF
Sbjct: 40  AEVELQTSRPVCVELYKDYKDLGRF 64


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -2

Query: 112  DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQSQ 5
            DL +F  G+T++ LP   ST  +    NLQ  W +WQS+
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQSK 2494


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 3   SWDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 149
           SW  +T     +F  + EK   +T    E+ P+SI +     V   PS+
Sbjct: 690 SWQTNTKPQIKEFKIVNEKKSNQTRNGVEIQPESIMNATYMTVQSAPSQ 738


>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 840

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 558 FFFFLLEATFIL*IYTLF-AVITKCFRYI 475
           FFFF +       +Y +F A+ T+CFRY+
Sbjct: 20  FFFFAMFTRCFQYVYPVFFAMFTRCFRYV 48


>SB_45908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 234 PREKVCASCQGQQNDRGVGIPGR 166
           PREK C  C+   N    G+PG+
Sbjct: 2   PREKKCPGCKKPVNAHDFGVPGK 24


>SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)
          Length = 461

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 325 VNSTIFHTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISE 486
           V++ +    A++  P  V K+KR   SFL    Y    V +F ++ +V+H ++E
Sbjct: 3   VSTDLAKLEAVISWP--VPKKKRELQSFLGLCTYYRKYVKMFADIARVLHRLTE 54


>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 78  KSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVP 206
           +S  V P S  + DA I     SKP  +++F+EFPP+G  + P
Sbjct: 136 RSPMVTPGSHSNHDAGIGG--KSKPN-LDNFEEFPPMGLPSTP 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,284,098
Number of Sequences: 59808
Number of extensions: 344892
Number of successful extensions: 965
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)