Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1483
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...   118   2e-27
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...   118   2e-27
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...   118   2e-27
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    38   0.005
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    34   0.080
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    34   0.080
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    29   2.3  
Z70753-2|CAA94760.1|  275|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U20861-6|AAA62294.1|  256|Caenorhabditis elegans Temporarily ass...    27   9.2  
AF288812-1|AAG10199.1|  566|Caenorhabditis elegans synembryn pro...    27   9.2  
AC084158-34|AAK68564.1|  566|Caenorhabditis elegans Resistance t...    27   9.2  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    27   9.2  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score =  118 bits (285), Expect = 2e-27
 Identities = 53/71 (74%), Positives = 59/71 (83%)
 Frame = +3

Query: 9   DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           DCHTAHIACKF E+KEKVDRRTGK  E  PK +KSGDA IV L+P+KPLCVESF ++ PL
Sbjct: 328 DCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPL 387

Query: 189 GRFAVPDMRHT 221
           GRFAV DMR T
Sbjct: 388 GRFAVRDMRQT 398


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score =  118 bits (285), Expect = 2e-27
 Identities = 53/71 (74%), Positives = 59/71 (83%)
 Frame = +3

Query: 9   DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           DCHTAHIACKF E+KEKVDRRTGK  E  PK +KSGDA IV L+P+KPLCVESF ++ PL
Sbjct: 362 DCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPL 421

Query: 189 GRFAVPDMRHT 221
           GRFAV DMR T
Sbjct: 422 GRFAVRDMRQT 432


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score =  118 bits (285), Expect = 2e-27
 Identities = 53/71 (74%), Positives = 59/71 (83%)
 Frame = +3

Query: 9   DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           DCHTAHIACKF E+KEKVDRRTGK  E  PK +KSGDA IV L+P+KPLCVESF ++ PL
Sbjct: 362 DCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPL 421

Query: 189 GRFAVPDMRHT 221
           GRFAV DMR T
Sbjct: 422 GRFAVRDMRQT 432


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +3

Query: 60  VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVPD 209
           +D++TG+      K +K  +  I+ L   +P  +E F+E+P LGRF + D
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRD 517


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 33.9 bits (74), Expect = 0.080
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +3

Query: 15  HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 194
           H+  + C F  +   +++  G+  +  P+ I  G +A+V +     + +E+F     LGR
Sbjct: 511 HSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGR 570


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 33.9 bits (74), Expect = 0.080
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +3

Query: 15  HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 194
           H+  + C F  +   +++  G+  +  P+ I  G +A+V +     + +E+F     LGR
Sbjct: 529 HSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGR 588


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 388 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 495
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


>Z70753-2|CAA94760.1|  275|Caenorhabditis elegans Hypothetical
           protein F40F9.3 protein.
          Length = 275

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 285 ALVTLPPPASEXTAPXRPREKVCASCQGQQNDRGVGI----PGRTLHIEAWK 142
           A V +PPPA + T+  R  EKV A    +Q    +G     P R  HI+  K
Sbjct: 14  AKVEVPPPAPKTTSAERAPEKVSAEKAQEQEKSAMGSVPIPPEREKHIKERK 65


>U20861-6|AAA62294.1|  256|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 327, isoform a protein.
          Length = 256

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 231 REKVCASCQGQQNDRGVGIPGRTLHIEAWK 142
           R  +C+ C+G  N R V   GR  H E ++
Sbjct: 192 RGSICSQCRGAINGRCVAAMGRKFHPEHFR 221


>AF288812-1|AAG10199.1|  566|Caenorhabditis elegans synembryn
           protein.
          Length = 566

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 122 CISRLDGFWVDFSRFTSTTVNFFFDFCKFAGNVGSV 15
           C +R +    D +R T     FF  FC F G+V ++
Sbjct: 211 CTNRSENSTQDINRATEALKTFFNVFCHFHGDVKAI 246


>AC084158-34|AAK68564.1|  566|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 8, isoform a
           protein.
          Length = 566

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 122 CISRLDGFWVDFSRFTSTTVNFFFDFCKFAGNVGSV 15
           C +R +    D +R T     FF  FC F G+V ++
Sbjct: 211 CTNRSENSTQDINRATEALKTFFNVFCHFHGDVKAI 246


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 343 HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNL 459
           H TA L S K V+  K+    F+ +  ++ C+  LF+ L
Sbjct: 107 HITAELSSKKEVTFTKKGKEDFIVHDRHEKCSAILFHAL 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,935,210
Number of Sequences: 27780
Number of extensions: 264609
Number of successful extensions: 752
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)