Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1483
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...   103   6e-23
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...   103   6e-23
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...   103   6e-23
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...   103   6e-23
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-...    97   9e-21
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    48   4e-06
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    40   0.001
At4g27900.2 68417.m04005 expressed protein                             32   0.30 
At4g27900.1 68417.m04004 expressed protein                             32   0.30 
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote...    28   3.7  
At5g42860.1 68418.m05224 expressed protein                             25   4.5  
At5g02140.1 68418.m00135 thaumatin-like protein, putative simila...    28   4.9  
At4g18600.1 68417.m02755 expressed protein                             27   6.5  

>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score =  103 bits (248), Expect = 6e-23
 Identities = 44/71 (61%), Positives = 56/71 (78%)
 Frame = +3

Query: 9   DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           DCHT+HIA KF+EI  K+DRR+GK  E  PK +K+GDA +V + P+KP+ VE+F E+PPL
Sbjct: 350 DCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPL 409

Query: 189 GRFAVPDMRHT 221
           GRFAV DMR T
Sbjct: 410 GRFAVRDMRQT 420


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score =  103 bits (248), Expect = 6e-23
 Identities = 44/71 (61%), Positives = 56/71 (78%)
 Frame = +3

Query: 9   DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           DCHT+HIA KF+EI  K+DRR+GK  E  PK +K+GDA +V + P+KP+ VE+F E+PPL
Sbjct: 350 DCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPL 409

Query: 189 GRFAVPDMRHT 221
           GRFAV DMR T
Sbjct: 410 GRFAVRDMRQT 420


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score =  103 bits (248), Expect = 6e-23
 Identities = 44/71 (61%), Positives = 56/71 (78%)
 Frame = +3

Query: 9   DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           DCHT+HIA KF+EI  K+DRR+GK  E  PK +K+GDA +V + P+KP+ VE+F E+PPL
Sbjct: 350 DCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPL 409

Query: 189 GRFAVPDMRHT 221
           GRFAV DMR T
Sbjct: 410 GRFAVRDMRQT 420


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score =  103 bits (248), Expect = 6e-23
 Identities = 44/71 (61%), Positives = 56/71 (78%)
 Frame = +3

Query: 9   DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           DCHT+HIA KF+EI  K+DRR+GK  E  PK +K+GDA +V + P+KP+ VE+F E+PPL
Sbjct: 350 DCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPL 409

Query: 189 GRFAVPDMRHT 221
           GRFAV DMR T
Sbjct: 410 GRFAVRDMRQT 420


>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
           domain-containing protein similar to SP|P13905
           Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
           thaliana}; contains Pfam profile PF03143: Elongation
           factor Tu C-terminal domain
          Length = 104

 Score = 96.7 bits (230), Expect = 9e-21
 Identities = 40/71 (56%), Positives = 54/71 (76%)
 Frame = +3

Query: 9   DCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           DCHT+HIA KF+EI  K+D RTG   E  PK +K+ +AAI+N+ P+KP+ VE++  +PPL
Sbjct: 16  DCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPL 75

Query: 189 GRFAVPDMRHT 221
           GRFA+ DMR T
Sbjct: 76  GRFAIRDMRQT 86


>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = +3

Query: 15  HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 194
           H     C+  E+K ++D +T K  +     +K+G A +  +  +  +C+E F +FP LGR
Sbjct: 448 HAVVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGR 507

Query: 195 FAV 203
           F +
Sbjct: 508 FTL 510


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 18/60 (30%), Positives = 34/60 (56%)
 Frame = +3

Query: 15  HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 194
           H A  A    ++   +D +TG+ T+ +P+ + +  +A++ +    P+CVE+F E   LGR
Sbjct: 586 HHAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGR 645


>At4g27900.2 68417.m04005 expressed protein
          Length = 261

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 96  PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           PKS+ SG+ + +++V  K   ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174


>At4g27900.1 68417.m04004 expressed protein
          Length = 261

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 96  PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 188
           PKS+ SG+ + +++V  K   ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174


>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
           similar to cell death suppressor protein lls1 from Zea
           mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
           Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
           [2Fe-2S] domain
          Length = 536

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 36  KFAEIKEKVDRRTGKSTEVNPKSI 107
           +F + KEK+DR  GK  E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281


>At5g42860.1 68418.m05224 expressed protein
          Length = 320

 Score = 25.0 bits (52), Expect(2) = 4.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 289 RKGHQGQEVARAVNSTIFHTTAILHSPKGVSKEKRATNS 405
           R  H G++ A     T FH+T +L SP G      +++S
Sbjct: 33  RDSHDGEKTA-----TSFHSTPVLTSPMGSPPHSHSSSS 66



 Score = 21.4 bits (43), Expect(2) = 4.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 145 PSLYV*SPSRNSH 183
           P+ +V SPSR+SH
Sbjct: 24  PAYFVQSPSRDSH 36


>At5g02140.1 68418.m00135 thaumatin-like protein, putative similar
           to SP|P50699 Thaumatin-like protein precursor
           {Arabidopsis thaliana}; contains Pfam profile PF00314:
           Thaumatin family
          Length = 294

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 427 KACNVTLFYNLYKVIHNISETFCYDCKQSVN 519
           +AC  TLF NL+K I   + ++ +D   S+N
Sbjct: 198 QACKPTLFANLFKAICPKAYSYAFDDSSSLN 228


>At4g18600.1 68417.m02755 expressed protein
          Length = 1907

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 93   NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVPDMR 215
            +P  + S ++ +   VP   + VE F    P    AVPDMR
Sbjct: 914  SPNVLGSTNSPVAEAVPQAQISVEEFVGIDPCLVEAVPDMR 954


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,076,292
Number of Sequences: 28952
Number of extensions: 241719
Number of successful extensions: 656
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)