Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1475
(678 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 30 1.7
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 30 1.7
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 29 3.0
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 29 3.0
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 29 3.0
Z75531-9|CAA99802.1| 277|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z67995-2|CAA91944.2| 458|Caenorhabditis elegans Hypothetical pr... 28 7.0
AY728060-1|AAU43721.1| 277|Caenorhabditis elegans cadmium-induc... 28 7.0
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 27 9.3
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 27 9.3
AF039050-3|AAC47936.2| 498|Caenorhabditis elegans Cytochrome p4... 27 9.3
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 290 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 424
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 290 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 424
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 574 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNED 678
+++P IHKE F YK+N A+LY +
Sbjct: 227 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 261
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 574 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNED 678
+++P IHKE F YK+N A+LY +
Sbjct: 211 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 245
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 574 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNED 678
+++P IHKE F YK+N A+LY +
Sbjct: 208 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 242
>Z75531-9|CAA99802.1| 277|Caenorhabditis elegans Hypothetical
protein K01D12.12 protein.
Length = 277
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = -1
Query: 282 KPVLYIFRNFQQLSC*CSCPYSFRYHSLCQFYNIHHQCLVGSHLGRRTEFSFAFQQIRHP 103
K +Y+++ + +C P+ + LC+ YNI ++ +V S + R + F ++
Sbjct: 43 KDTVYLYQFKRLKNCPNLSPFCMKIEILCRVYNIPYE-IVESSMARSRNGTLPFIELNGE 101
Query: 102 H 100
H
Sbjct: 102 H 102
>Z67995-2|CAA91944.2| 458|Caenorhabditis elegans Hypothetical
protein M153.2 protein.
Length = 458
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 609 NAILSCGFRINEAILHLCYVNFLQHFHIHK 520
+AI+ CG ++ + LCY+NF Q + K
Sbjct: 295 DAIILCGTIVHLVVYALCYINFPQDSSLKK 324
>AY728060-1|AAU43721.1| 277|Caenorhabditis elegans
cadmium-inducible lysosomal proteinCDR-6 protein.
Length = 277
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = -1
Query: 282 KPVLYIFRNFQQLSC*CSCPYSFRYHSLCQFYNIHHQCLVGSHLGRRTEFSFAFQQIRHP 103
K +Y+++ + +C P+ + LC+ YNI ++ +V S + R + F ++
Sbjct: 43 KDTVYLYQFKRLKNCPNLSPFCMKIEILCRVYNIPYE-IVESSMARSRNGTLPFIELNGE 101
Query: 102 H 100
H
Sbjct: 102 H 102
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 90 KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 185
++K+VDA KQK ++ Q V LN +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 90 KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 185
++K+VDA KQK ++ Q V LN +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 90 KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 185
++K+VDA KQK ++ Q V LN +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>AF039050-3|AAC47936.2| 498|Caenorhabditis elegans Cytochrome p450
family protein 34A6 protein.
Length = 498
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 141 SFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVENF 260
+F +S ++TDDE +K K+++ E M+N +K + F
Sbjct: 397 AFATQLSAMHTDDETFKNHKEFNPERFMENNNLEKKLIPF 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,817,826
Number of Sequences: 27780
Number of extensions: 301993
Number of successful extensions: 816
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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