Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1475
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24440.1 68416.m03067 fibronectin type III domain-containing ...    34   0.099
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    31   0.53 
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    31   0.53 
At1g09910.1 68414.m01115 expressed protein                             30   1.6  
At2g41150.2 68415.m05083 expressed protein an isoform contains a...    28   4.9  
At2g41150.1 68415.m05082 expressed protein an isoform contains a...    28   4.9  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    28   6.5  
At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase ...    27   8.6  

>At3g24440.1 68416.m03067 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 602

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +2

Query: 23  CLNSGWACSRRAQQCSTKAEHHKDKKCGCRIC*KAKENS--VLLPRCEPTK 169
           CL S W C   + + +   E    K+C C +C    EN    L   CEP K
Sbjct: 42  CLRSSWICKNASCRANVPKEDSFCKRCSCCVCHNFDENKDPSLWLVCEPEK 92


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 499 RSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 365
           R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 836 RKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 499 RSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 365
           R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 836 RKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At1g09910.1 68414.m01115 expressed protein
          Length = 675

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 11  NHEVCLNSGWACSRRAQQCSTKAEHHKDKK 100
           NHE  LN+G  CS    Q ++   H KD +
Sbjct: 14  NHETALNAGHHCSEGTDQGTSGLSHRKDHR 43


>At2g41150.2 68415.m05083 expressed protein an isoform contains a GA
           donor splice site supported by FL-cDNA alignment which
           truncates the ORF.
          Length = 401

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 538 ALPYS*TF*GYFIRSRNNET 479
           ALPY  T  GYF+RS  N+T
Sbjct: 40  ALPYRTTLIGYFVRSTRNKT 59


>At2g41150.1 68415.m05082 expressed protein an isoform contains a GA
           donor splice site supported by FL-cDNA alignment which
           truncates the ORF.
          Length = 259

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 538 ALPYS*TF*GYFIRSRNNET 479
           ALPY  T  GYF+RS  N+T
Sbjct: 43  ALPYRTTLIGYFVRSTRNKT 62


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 102 VDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVENF*RCT 272
           V A+ +EK++K L    D S      E+ K  KD+D+E   +    K+ VE   + T
Sbjct: 69  VKALELEKKEKELCLI-DESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQLEKFT 124


>At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase
           (PGS1) identical to phosphatidylglycerolphosphate
           synthase GI:13365519 from [Arabidopsis thaliana]
          Length = 296

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 174 QCLVGSHLGRRTEFSFAFQQIRHPHFLSLWCSA 76
           +C++ S    RT   F  Q  RH H LS + S+
Sbjct: 33  RCIITSRYSSRTSLRFPIQISRHQHRLSYFSSS 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,746,782
Number of Sequences: 28952
Number of extensions: 267866
Number of successful extensions: 650
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)