Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1471
         (697 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E0E427 Cluster: hypothetical protein OM2255_0183...    33   8.8  
UniRef50_Q6ZRL6 Cluster: CDNA FLJ46261 fis, clone TESTI4025062; ...    33   8.8  

>UniRef50_UPI0000E0E427 Cluster: hypothetical protein OM2255_01837;
           n=1; alpha proteobacterium HTCC2255|Rep: hypothetical
           protein OM2255_01837 - alpha proteobacterium HTCC2255
          Length = 154

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 370 YLMDSLHFDLKKNLEMLQWVKGIFLCYTHIFTQDIRLMT 486
           + +DS +FD K  LE  +WV  + + YTH FT  + L T
Sbjct: 78  FQLDSPYFDAKSTLERPRWV-AVDMVYTHKFTTLVPLAT 115


>UniRef50_Q6ZRL6 Cluster: CDNA FLJ46261 fis, clone TESTI4025062;
           n=2; Homo sapiens|Rep: CDNA FLJ46261 fis, clone
           TESTI4025062 - Homo sapiens (Human)
          Length = 280

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 68  LHTTQPQKLVTQSAATTFNIASCKNPGSTQKNRSW 172
           +H T       QS+ T+F   SC++ G++  +RSW
Sbjct: 8   MHLTSSTSCSCQSSGTSFTSCSCRSSGTSSTSRSW 42


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,372,720
Number of Sequences: 1657284
Number of extensions: 10413456
Number of successful extensions: 21455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21452
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)