Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1471
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0055 + 21977546-21978061,21978144-21978162,21978168-219784...    31   1.2  
12_02_1159 + 26585042-26585441,26585520-26585608,26585670-265857...    29   4.7  
02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202     28   8.1  
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879...    28   8.1  

>05_05_0055 +
           21977546-21978061,21978144-21978162,21978168-21978486,
           21978779-21978799,21980780-21980857,21981116-21981359
          Length = 398

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 97  NPVCSHNF*YCQLQKSRQHSKESFMATLTVH 189
           +PVC+ N   CQLQK+R   K+  +A  TVH
Sbjct: 43  SPVCTTN---CQLQKARVQWKKQMVAVQTVH 70


>12_02_1159 +
           26585042-26585441,26585520-26585608,26585670-26585720,
           26586189-26586282,26586451-26586512,26586589-26586671,
           26586793-26586901,26587010-26587051,26587152-26587316,
           26588165-26588341,26588820-26588984,26589069-26589332
          Length = 566

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 150 LPGFLQLAILKVVAADWVTSFC-GCVV 73
           LPG + +++LK +  DW+T  C GC V
Sbjct: 531 LPGGMGVSLLKRLRLDWITVCCLGCAV 557


>02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202
          Length = 580

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 198 STFMNFNTWF*-KFSFGSTFMIQPSFNNI-FIDKHLKRPLESYH 323
           ST+ +F T    +F+  S   I  +F N+  +  H+KRPL+S H
Sbjct: 249 STWPDFKTMICQRFAAKSNIEITDTFRNLKHLKDHIKRPLKSLH 292


>01_01_1111 -
           8791925-8792649,8793506-8793890,8794341-8794618,
           8794998-8795163
          Length = 517

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -3

Query: 272 KTRLYHEGRP----KTKFLKPRIEIHERRTIKCTVSVAMNDSFECCR 144
           KT ++HEGRP    +T+++     I ER   +C     M D++  CR
Sbjct: 112 KTLVFHEGRPPTGRRTEWIMHEYYIDER---ECQACPDMKDAYVLCR 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,891,796
Number of Sequences: 37544
Number of extensions: 253813
Number of successful extensions: 553
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)