Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1471
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49287| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_14784| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  

>SB_49287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 104 SAATTFNIASCKNPGSTQKNRSWQH*PCILWFDVHE 211
           S A  +N+ + K PG TQ NR   H P   W +  E
Sbjct: 7   SLAVVYNVVTGKTPGVTQLNRLAAHPPFASWRNSEE 42


>SB_14784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 119 FNIASCKNPGSTQKNRSWQH*PCILWFDVHE 211
           +N+ + KNPG TQ NR   H P   W +  E
Sbjct: 12  YNVVTGKNPGVTQLNRLAAHPPFASWRNSEE 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,243,281
Number of Sequences: 59808
Number of extensions: 325467
Number of successful extensions: 789
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)