Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1471
         (697 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-124|AAS64635.1| 1503|Drosophila melanogaster CG11838-PB...    31   2.0  
AE014134-123|AAF51483.1| 1443|Drosophila melanogaster CG11838-PA...    31   2.0  

>AE014134-124|AAS64635.1| 1503|Drosophila melanogaster CG11838-PB,
           isoform B protein.
          Length = 1503

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 53  SETLYLHTTQPQKLVTQSA-ATTFNIASCKNPGSTQKNRSWQH*PCILWFDVH-EFQYV 223
           S T++  T +PQ+ VT    AT+   A C +P        W+H    +WF  H EF  V
Sbjct: 42  SVTIFADTGEPQRDVTYPVHATSQATALCWHPEKALLASGWEHGDIHVWFAGHREFASV 100


>AE014134-123|AAF51483.1| 1443|Drosophila melanogaster CG11838-PA,
           isoform A protein.
          Length = 1443

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 53  SETLYLHTTQPQKLVTQSA-ATTFNIASCKNPGSTQKNRSWQH*PCILWFDVH-EFQYV 223
           S T++  T +PQ+ VT    AT+   A C +P        W+H    +WF  H EF  V
Sbjct: 42  SVTIFADTGEPQRDVTYPVHATSQATALCWHPEKALLASGWEHGDIHVWFAGHREFASV 100


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,036,362
Number of Sequences: 53049
Number of extensions: 473641
Number of successful extensions: 1340
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)