Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1471
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    31   1.0  
AF026202-5|AAB71241.2|  285|Caenorhabditis elegans Hypothetical ...    29   2.4  

>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 574 INC-KFIVALIFLLSVTFNAIRMKLRLFLVKSSILYL 467
           +NC  F++ALIFL+++ FN I      ++V S I YL
Sbjct: 150 LNCLNFVLALIFLINLNFNVI----SFYMVNSLIFYL 182


>AF026202-5|AAB71241.2|  285|Caenorhabditis elegans Hypothetical
           protein C10E2.1 protein.
          Length = 285

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -3

Query: 353 IELLRMTLKEMITLKRSLEVFVYKNVVKTRLYHEGRPKTKFLKPRIEIHERRTIKCTVSV 174
           IE      + + TLK +L+V   +     + +H  + + + LK +  +HE +  K  ++ 
Sbjct: 188 IETYASKKETLKTLKSNLKVATNEEQKCFKKWHNEKDRAELLKAKRALHESKIGKVKIAF 247

Query: 173 AMND 162
            MND
Sbjct: 248 EMND 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,222,313
Number of Sequences: 27780
Number of extensions: 270422
Number of successful extensions: 614
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)