Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1467
         (752 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q09726 Cluster: Uncharacterized protein C31A2.06; n=1; ...   173   5e-42
UniRef50_Q8IJM8 Cluster: Putative uncharacterized protein; n=1; ...    35   2.5  
UniRef50_Q48I63 Cluster: Ribose ABC transporter, ATP-binding pro...    34   3.3  
UniRef50_UPI0000E48B4F Cluster: PREDICTED: hypothetical protein;...    33   5.7  
UniRef50_A4J3J2 Cluster: GerA spore germination protein; n=3; Pe...    33   7.6  
UniRef50_Q4DV85 Cluster: Putative uncharacterized protein; n=1; ...    33   10.0 
UniRef50_Q9LF10 Cluster: Chloroplastic group IIA intron splicing...    33   10.0 

>UniRef50_Q09726 Cluster: Uncharacterized protein C31A2.06; n=1;
           Schizosaccharomyces pombe|Rep: Uncharacterized protein
           C31A2.06 - Schizosaccharomyces pombe (Fission yeast)
          Length = 542

 Score =  173 bits (420), Expect = 5e-42
 Identities = 82/86 (95%), Positives = 82/86 (95%)
 Frame = +3

Query: 240 KGWCCFNERLYNHVYLLAFESKNERVINYVLTNIFEDMVSQSPPIPASKLMATSLKKCVQ 419
           K    FNERLYNHVYLLAFESKNERVINYVLTNIFEDMVSQSPPIPASKLMATSLKKCVQ
Sbjct: 457 KAGVVFNERLYNHVYLLAFESKNERVINYVLTNIFEDMVSQSPPIPASKLMATSLKKCVQ 516

Query: 420 SLPEKYAHSFPSVRNYIAKMENSMTH 497
           SLPEKYAHSFPSVRNYIAKMENSMTH
Sbjct: 517 SLPEKYAHSFPSVRNYIAKMENSMTH 542



 Score =  155 bits (377), Expect = 8e-37
 Identities = 73/84 (86%), Positives = 73/84 (86%)
 Frame = +1

Query: 4   DLKTIDXXXXXXXXXXXMICSCMVKGESNFFLDNRIFLLERIMNRYGIPMTIDTFLLMQF 183
           DLKTID           MICSCMVKGESNFFLDNRIFLLERIMNRYGIPMTIDTFLLMQF
Sbjct: 378 DLKTIDSFSLKLLFLKFMICSCMVKGESNFFLDNRIFLLERIMNRYGIPMTIDTFLLMQF 437

Query: 184 ILAKSNRWSEVWRRWDNLRKAGVV 255
           ILAKSNRWSEVWRRWDNLRKAGVV
Sbjct: 438 ILAKSNRWSEVWRRWDNLRKAGVV 461


>UniRef50_Q8IJM8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 310

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 23/80 (28%), Positives = 39/80 (48%)
 Frame = +3

Query: 258 NERLYNHVYLLAFESKNERVINYVLTNIFEDMVSQSPPIPASKLMATSLKKCVQSLPEKY 437
           N+ +Y     +  E  N + INY L+N+ + M  +     +S+   T+ K  + S+ EKY
Sbjct: 64  NKEMYEKHNKMNNEEDNNKNINYDLSNLKDGMKKKHFGSNSSE-DKTNKKSSINSVLEKY 122

Query: 438 AHSFPSVRNYIAKMENSMTH 497
            H+    +N     +N MTH
Sbjct: 123 QHTKHEEKNLQNLNKNMMTH 142


>UniRef50_Q48I63 Cluster: Ribose ABC transporter, ATP-binding
           protein; n=3; Pseudomonas syringae group|Rep: Ribose ABC
           transporter, ATP-binding protein - Pseudomonas syringae
           pv. phaseolicola (strain 1448A / Race 6)
          Length = 627

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 130 MNRYGIPMTIDTFLLMQFILAKSNRWSEVWRRW-DNLRKAGVVSMNVYTITYTFWPSKVK 306
           ++R+G+P+    F+L+  ++A ++ +   WR W D LR+  +  +    +TY      + 
Sbjct: 324 VDRFGLPLV---FILLCLVMAFASEYFMTWRNWMDILRQTSINGILAVGMTYVILTKGID 380

Query: 307 MSVS*IM 327
           +SV  I+
Sbjct: 381 LSVGSIL 387


>UniRef50_UPI0000E48B4F Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 736

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 11/57 (19%), Positives = 29/57 (50%)
 Frame = +1

Query: 79  GESNFFLDNRIFLLERIMNRYGIPMTIDTFLLMQFILAKSNRWSEVWRRWDNLRKAG 249
           G++  F+D+   + + ++N+  +    + + ++Q +   + +W  VW RW  +   G
Sbjct: 262 GKTQVFMDSTSAMYDAMLNQTNLKNNNNKYYVLQLLEETNRKWYHVWFRWGRVGNKG 318


>UniRef50_A4J3J2 Cluster: GerA spore germination protein; n=3;
           Peptococcaceae|Rep: GerA spore germination protein -
           Desulfotomaculum reducens MI-1
          Length = 509

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = +3

Query: 264 RLYNHVYLLAFESKNERVINYVLTNIFEDMVSQ-SPPIPASKLMATSL-KKCVQSL--PE 431
           RL N V  +   SK + VI+Y+      DMV +    +   K+    + +K ++ L  P 
Sbjct: 171 RLRNEVMQVGTRSKTDVVISYIEDIANPDMVKRIKENLQKVKIDGIPMAEKAIEELIEPG 230

Query: 432 KYAHSFPSVRNYIAKMENSMTH 497
           KY H FP VR +  + + ++TH
Sbjct: 231 KYGHLFPKVR-FTERPDVAVTH 251


>UniRef50_Q4DV85 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 149

 Score = 32.7 bits (71), Expect = 10.0
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
 Frame = +3

Query: 306 NERVINYV-LTNIF----EDMVSQSPPIPASKLMATSLKKCVQSLPEKYAHSFPSVRN 464
           N R++ YV L++++      M+ QSP  P  K    +L+ CV S+ ++++   P V+N
Sbjct: 53  NPRLLAYVFLSSLYVTHTNKMLKQSPENPFYKSPTPALRPCVASIKDRHSQMHPDVQN 110


>UniRef50_Q9LF10 Cluster: Chloroplastic group IIA intron splicing
           facilitator CRS1, chloroplast precursor; n=1;
           Arabidopsis thaliana|Rep: Chloroplastic group IIA intron
           splicing facilitator CRS1, chloroplast precursor -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 718

 Score = 32.7 bits (71), Expect = 10.0
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +1

Query: 112 FLLERIMNRYGIPMTIDTFLLMQFILAKSNRWSEVWRRWDNLRKAGVVSMNVYTI 276
           F+L R M +  +P T +  +L + +L +  R +   R+W N+RKAGV  + V  I
Sbjct: 189 FILRR-MKKESVPTTAE-LILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKI 241


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,657,179
Number of Sequences: 1657284
Number of extensions: 14464067
Number of successful extensions: 30791
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30790
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)