Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1467
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...   173   3e-44
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    32   0.10 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.8  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    26   5.0  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   6.6  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   8.8  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score =  173 bits (420), Expect = 3e-44
 Identities = 82/86 (95%), Positives = 82/86 (95%)
 Frame = +3

Query: 240 KGWCCFNERLYNHVYLLAFESKNERVINYVLTNIFEDMVSQSPPIPASKLMATSLKKCVQ 419
           K    FNERLYNHVYLLAFESKNERVINYVLTNIFEDMVSQSPPIPASKLMATSLKKCVQ
Sbjct: 457 KAGVVFNERLYNHVYLLAFESKNERVINYVLTNIFEDMVSQSPPIPASKLMATSLKKCVQ 516

Query: 420 SLPEKYAHSFPSVRNYIAKMENSMTH 497
           SLPEKYAHSFPSVRNYIAKMENSMTH
Sbjct: 517 SLPEKYAHSFPSVRNYIAKMENSMTH 542



 Score =  155 bits (377), Expect = 5e-39
 Identities = 73/84 (86%), Positives = 73/84 (86%)
 Frame = +1

Query: 4   DLKTIDXXXXXXXXXXXMICSCMVKGESNFFLDNRIFLLERIMNRYGIPMTIDTFLLMQF 183
           DLKTID           MICSCMVKGESNFFLDNRIFLLERIMNRYGIPMTIDTFLLMQF
Sbjct: 378 DLKTIDSFSLKLLFLKFMICSCMVKGESNFFLDNRIFLLERIMNRYGIPMTIDTFLLMQF 437

Query: 184 ILAKSNRWSEVWRRWDNLRKAGVV 255
           ILAKSNRWSEVWRRWDNLRKAGVV
Sbjct: 438 ILAKSNRWSEVWRRWDNLRKAGVV 461


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 750 RLAKNNRPSKKHR 712
           RLAKNNRPSKKHR
Sbjct: 836 RLAKNNRPSKKHR 848


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 116  RNMRLSRKKFDSPLTIQEHIINFKKS-SFSEN 24
            R  +LS K F S + + +H I+ KKS SFS N
Sbjct: 3713 RRYKLSIKSFLSVVVVFQHFISLKKSYSFSFN 3744


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 397 VAINLLAGMGGDWLTISSKMLVST 326
           V + +LAGMGG  LT+S+++ V +
Sbjct: 449 VLVLILAGMGGGLLTLSAQIAVQS 472


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 159 NSHGYSITVHNPF--QKKYAVVEKEV*FPFNHTRAYHKF 49
           +S G+ +   + F   K Y  VE+EV FPF +  +Y  F
Sbjct: 673 SSRGHCVYGEDVFVGYKYYEAVEREVLFPFGYGLSYTTF 711


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 413 CSKLTRKVCTFVSISAKLYCKNGKLNDALNLMYCTFYV 526
           CS++T  +   V    + Y K  KLN   N+M  T YV
Sbjct: 235 CSEVTGNLLINVMHVDEQYVKRLKLNQPYNIMGITVYV 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,177
Number of Sequences: 5004
Number of extensions: 68144
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)