Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1467
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1047 + 10765856-10767784                                         29   4.0  
01_06_1478 - 37648781-37649113,37649200-37649455,37649954-376500...    29   4.0  
06_03_0493 + 21402536-21404599                                         28   6.9  
05_07_0192 - 28314224-28316287                                         28   9.2  

>12_01_1047 + 10765856-10767784
          Length = 642

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 58  ICSCMVKGESNFFLDNRIFLLERIMNRYGIPMTIDTFLLMQFILAKSNRWSEVWRRWDNL 237
           + +C++    N     RI  +   M   G+P  I TF  +  I  +  +  EV+R +D +
Sbjct: 122 VYNCLLGAVKNSGEFGRIHDVLADMEAQGVPPNIVTFNTLMSIYVEQGKIDEVFRVFDTI 181

Query: 238 RKAGVV 255
             +G+V
Sbjct: 182 EGSGLV 187


>01_06_1478 -
           37648781-37649113,37649200-37649455,37649954-37650066,
           37650312-37650689,37650822-37650999,37651429-37651565,
           37651993-37652155,37652531-37652688,37652819-37652923,
           37653106-37653253,37653816-37654132
          Length = 761

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 142 GIPMTIDTF--LLMQFILAKSNRWSEVWRRWDNLRKAGVVSMNVYTITY 282
           GIP  ID F  L++ F +  S ++ ++ +RW+N R      + VYTI +
Sbjct: 519 GIPSNIDLFKELILPFAIV-SEKFYKL-KRWENSRTTACFLLVVYTIIF 565


>06_03_0493 + 21402536-21404599
          Length = 687

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 64  SCMVKGESNFF-LDNRIFLLERIMNRYGIPMTIDTFLLMQFILAKSNRWSEVWRRWDNLR 240
           +C++ G      LD+ I LL+ ++ R G+P+ + T+ ++   L K  + +E       + 
Sbjct: 332 TCLIDGTCKAGRLDDAIVLLDEMV-RQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMME 390

Query: 241 KAGV 252
           KAGV
Sbjct: 391 KAGV 394


>05_07_0192 - 28314224-28316287
          Length = 687

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +1

Query: 55  MICSCMVKGESNFFLDNRIFLLERIMNRYGIPMTIDTFLLMQFILAKSNRWSEVWRRWDN 234
           ++ SC V    N+ L +R+   E+I      P  + T++L+  + AK+NRW  V +    
Sbjct: 490 LLSSCQVY--RNYGLGHRV--AEQIFQLK--PKDVGTYVLLSNMYAKANRWDGVVKVRRL 543

Query: 235 LRKAGV 252
           +R+ GV
Sbjct: 544 MRELGV 549


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,549,638
Number of Sequences: 37544
Number of extensions: 365454
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)