Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1467
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)                      31   0.76 
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               29   4.1  
SB_48805| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)                 29   5.4  

>SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)
          Length = 1702

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +3

Query: 249  CCFNER-LYNHVYLLAFESKNERVINYVL 332
            CCF+E   + ++ L+ FE+K E++I YV+
Sbjct: 1547 CCFDEEPAFFNITLIDFENKTEKIIRYVM 1575


>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 434

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 184 ILAKSNRWSEVWRRWDNLRKAGVVSMNV 267
           +L     W++ W +WD  +  G+ ++NV
Sbjct: 84  VLLCRQTWTDAWLKWDPAKHGGITAINV 111


>SB_48805| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)
          Length = 427

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 440 TFVSISAKLYCKNGKLNDALNLMYCTFYVCI 532
           T+     K YC    L+    ++YCTFY C+
Sbjct: 169 TYSYSPGKAYCTVTWLSTVPGVVYCTFYACV 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,539,845
Number of Sequences: 59808
Number of extensions: 466760
Number of successful extensions: 1012
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)