Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1467
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.1  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   7.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 643 KPKLKFFNADAKFMHLVTQKYKLSMLF 723
           KP   F+N    ++H +T   K   L+
Sbjct: 87  KPDTYFYNGKHSYLHTITSPNKFVRLY 113


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 575 KEGVGFKVNITNARICIRRKYNTSDS 498
           K G+GF  ++ +  I +RR Y+ + +
Sbjct: 223 KFGLGFTTDLLSYNILLRRHYSMNST 248


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 59  IINFKKSSFSEN 24
           ++NF K SFSEN
Sbjct: 81  LLNFPKRSFSEN 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,333
Number of Sequences: 438
Number of extensions: 4906
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)