Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1467
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16180.1 68418.m01891 hypothetical protein contains Pfam doma...    33   0.27 
At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containi...    32   0.47 
At3g09100.2 68416.m01070 mRNA capping enzyme family protein simi...    31   1.1  
At5g21930.1 68418.m02545 ATPase E1-E2 type family protein / halo...    29   2.5  
At1g10200.1 68414.m01150 transcription factor LIM, putative stro...    29   2.5  
At5g64620.1 68418.m08120 invertase/pectin methylesterase inhibit...    28   7.7  

>At5g16180.1 68418.m01891 hypothetical protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 718

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +1

Query: 112 FLLERIMNRYGIPMTIDTFLLMQFILAKSNRWSEVWRRWDNLRKAGVVSMNVYTI 276
           F+L R M +  +P T +  +L + +L +  R +   R+W N+RKAGV  + V  I
Sbjct: 189 FILRR-MKKESVPTTAE-LILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKI 241


>At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 883

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 395 DIFKKMCSKLTRKVCTFVSISAKLYCKNGKLNDALNL 505
           D+F KM  K  R  C  VS   + YC+ G  ++A +L
Sbjct: 347 DVFNKMLKKRKRINCVIVSSILQCYCQMGNFSEAYDL 383


>At3g09100.2 68416.m01070 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF00782: Dual specificity phosphatase
           catalytic domain
          Length = 672

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = -3

Query: 306 FYFRRP-KGIRDCINVH*NNTSLSKIIPTTPNFAPTIAFCQYKLHE*KRVNSHGYSITVH 130
           F FR P +GI D ++ H        II T P+        +Y +++   +N  G S+ V 
Sbjct: 407 FPFRHPTEGISDKVH-HFTLLDGEMIIDTLPDKQKQER--RYLIYDMVAIN--GQSV-VE 460

Query: 129 NPFQKKYAVVEKEV*FPFNHTRA 61
            PF +++ ++EKEV  P NH +A
Sbjct: 461 RPFYERWKMLEKEVIDPRNHEKA 483


>At5g21930.1 68418.m02545 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein
           contains InterPro accession IPR001757: ATPase, E1-E2
           type; contains Pfam profiles PF00403:
           Heavy-metal-associated domain, PF00702: haloacid
           dehalogenase-like hydrolase
          Length = 883

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 415 THFFKDVAINLLAGMGGDWLTISSKMLV 332
           +H F DV +N +AG  GD L +S K+ V
Sbjct: 470 SHIFPDVLLNDIAGPDGDALALSLKLAV 497


>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
           similarity to transcription factor Ntlim1 [Nicotiana
           tabacum] GI:5689136, LIM domain protein WLIM-1
           [Helianthus annuus] GI:5070280; contains Pfam profile
           PF00412: LIM domain
          Length = 190

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +2

Query: 386 INGDIFKKMCSKLTRKVCT-----FVSISAKLYCKN 478
           +NG ++ K C K T   CT     +++   KLYCK+
Sbjct: 125 VNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKH 160


>At5g64620.1 68418.m08120 invertase/pectin methylesterase inhibitor
           family protein low similarity to SP|P83326
           Pectinesterase inhibitor (Pectin methylesterase
           inhibitor) (PMEI) {Actinidia chinensis}; contains Pfam
           profile PF04043: Plant invertase/pectin methylesterase
           inhibitor
          Length = 180

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 396 TSLKKCVQSLPEKYAHSFPSVRNYIAKMENSMTH*I*CIVLSTYAYTRICNVYFK 560
           T LKK +Q   EKYA +  S+R  I  +++         VL+   Y  +C   F+
Sbjct: 92  TVLKKVLQDCSEKYALAADSLRLTIQDLDDEAYDYASMHVLAAQDYPNVCRNIFR 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,825,263
Number of Sequences: 28952
Number of extensions: 325153
Number of successful extensions: 738
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)