Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1459
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    28   1.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.3  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   3.0  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   4.0  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    26   5.2  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   6.9  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   9.1  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.1  

>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
 Frame = +2

Query: 275 YTGRNCETDVDECSGAAACLNGGRCVDAVNNYTCDCTATG-------YTGARCETNVNEC 433
           YT  +C T + EC G      G   +D  +     C+A G           RC   +N C
Sbjct: 105 YTASSC-TAIYECEGDYPARTGNEIIDEFDQLNLQCSACGTRFFNNDNENTRCYVKLNYC 163

Query: 434 EED 442
             D
Sbjct: 164 YPD 166


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +3

Query: 99  CVEDGRGDYSCDCPPGYHGTYCELEVSLDPLCVAGPCRNNGSCSVP 236
           C  DG  + SC    G    YCE  V   P     PC     C  P
Sbjct: 717 CHPDGECESSCKKECGKRRMYCE-HVCQSPCHAGHPCDERIPCKAP 761


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +2

Query: 353  DAVNNYTCDCTATGYTGAR 409
            +AV++YT +C A+G+T AR
Sbjct: 1555 EAVSDYTKECIASGFTMAR 1573


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -1

Query: 528 AVLPGVAGWHAHTNPPYVS*HTPCPHSARSSSHSFTLVSQRAPVYPVAVQSQV*LLTAST 349
           ++L   +G +  + PPY S  T  PH   + S S      R+ ++ +    +       T
Sbjct: 122 SMLYHTSGSYPESQPPYSSYSTDAPHYYHAGSESSAYYDSRSRLHGIQPPPK-----RRT 176

Query: 348 QRPPLRQAAAP 316
             PP R+ A P
Sbjct: 177 LSPPPRRLADP 187


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 514 TGEHCHRMSACASGPCGREGHAWRRG 591
           T +H  +++  A+G CG + H W+ G
Sbjct: 27  TDDHQVKVAIKATGICGSDVHYWKEG 52


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = -1

Query: 492 TNPPYVS*HTPCPHSARSSSHSFTLVSQRAPVYPVAVQSQV*LLTASTQRPPLRQAAAPE 313
           ++PP+ S  +  P SA SS  SFT  +        A  + V   T +        +++P 
Sbjct: 452 SSPPFYSNSSVIPTSAPSSVSSFTSSNSSYTTTLTASNTTV-TFTGTGTGSATATSSSPY 510

Query: 312 HSSTSVSQLRPVYPGGQVQS 253
           +S++S+     V   G V S
Sbjct: 511 YSNSSIIVPTTVSTSGSVSS 530


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +2

Query: 404 ARCETNVNECE--EDR--ALCGHGVCY 472
           A C+ +V   E  +DR  +LCGHG CY
Sbjct: 623 AMCKCSVCNFERWKDRIISLCGHGFCY 649


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 486 PPYVS*HTPCPHSARSSSHSFTL 418
           PP  S H P P SA +  HS +L
Sbjct: 3   PPSSSSHFPSPSSANNDFHSLSL 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,469
Number of Sequences: 5004
Number of extensions: 35147
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)