Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1459
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.81 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.5  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.3  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.7  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 350 VDAVNNYTCDCTATGYTG 403
           +D  NNYT DCT    TG
Sbjct: 181 LDISNNYTTDCTIEYSTG 198


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 359 VNNYTCDCTATGYTG 403
           V NYT DCT    TG
Sbjct: 215 VKNYTADCTQVYSTG 229


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 339 PLRQAAAPEHSSTSVSQLRPVYP 271
           P+     P+HS T   +LRP YP
Sbjct: 211 PVTLTTVPKHSKTKSPKLRP-YP 232


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -3

Query: 610 HT-HRNPPPSSTHAPPVRTVL 551
           HT H +P P  T  P V T+L
Sbjct: 461 HTPHHHPHPPETPGPQVETIL 481


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
 Frame = +3

Query: 42  CEVDAGDPCASAACRHGARCVEDGRGDYSCDCPPGYHG-TYCELEVSLDPLCVAGPCRNN 218
           CE D   P     C  G+    DG+ D       G+ G +      S+       PC  N
Sbjct: 5   CECDLATPRTGTNCSSGSSSDSDGQTD------EGFVGDSQGFFRRSIQQKIQYRPCTKN 58

Query: 219 GSCSV 233
             CS+
Sbjct: 59  QQCSI 63


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 598 NPPPSSTHAPPVRTVLTHTPTS 533
           +PP SST  P   T  T T T+
Sbjct: 95  HPPASSTSLPATITTTTTTTTT 116


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 120 DYSC-DCPPGYHGTYCELEVSLDP 188
           D SC   PPG  G+ C+++++  P
Sbjct: 96  DGSCLYVPPGIFGSTCKIDIAWFP 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,062
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)