Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1458
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                142   4e-34
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           48   7e-06
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            39   0.004
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)                31   1.4  
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)                 29   3.3  
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)                   29   4.4  
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)                    29   4.4  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  142 bits (343), Expect = 4e-34
 Identities = 63/84 (75%), Positives = 74/84 (88%)
 Frame = -3

Query: 759 IVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 580
           +V F+P+NITTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+++RG VAGD KNNPPK 
Sbjct: 136 VVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNVAGDFKNNPPKP 195

Query: 579 AADFTAQVIVLNHPGQISNGYTPV 508
              FTAQVIV+NHPG+I  GY+PV
Sbjct: 196 CKSFTAQVIVMNHPGEIHAGYSPV 219



 Score =  140 bits (339), Expect = 1e-33
 Identities = 62/85 (72%), Positives = 75/85 (88%)
 Frame = -2

Query: 508 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 329
           LDCHTAHIACKF ++ EK+DRR+GK  E NPK IK+GDAA+V ++PSKP+CVE+F EFPP
Sbjct: 220 LDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPP 279

Query: 328 LGRFAVRDMRQTVAVGVIKAVNFKE 254
           LGRFAVRDM+QTVAVGVIK+V+  E
Sbjct: 280 LGRFAVRDMKQTVAVGVIKSVDKTE 304


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -2

Query: 454 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 305
           +D++TGK  +  P+ IK    AI  L     +C+E F +F  +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = -2

Query: 391 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 275
           A V L  S+P+CVE ++++  LGRF +R    T+A GVI
Sbjct: 40  AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 402  DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQSKL 512
            DL +F  G+T++ LP   ST  +    NLQ  W +WQSK+
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQSKV 2495


>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = -2

Query: 490 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 362
           HIA K  E+K   D ++ K+ ++ PK++ SGD    ++VP++P
Sbjct: 74  HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112


>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
          Length = 726

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 469 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 329
           EI     R TG++TE+N  ++ SG+  I  +V +   C+   Q + P
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLYGP 301


>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
          Length = 903

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 385 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 296
           +++VP++P CV SF EF  +    +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409


>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 27  FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 167
           +QI+Y+  Y   KI +H++  K  RK + L  FFPS  H +    +SQL
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 469 LQICRQCGQCGNPNWCVTV*DLTRMVKHNDLSCKICS 579
           L +C QCGQC +P +CV V  + +M+      C  C+
Sbjct: 767 LIVCSQCGQCFHP-YCVGV-KVNKMILSKGWRCLDCT 801


>SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)
          Length = 598

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 350 VLPGIPTPRSFCCP*HEADSCCRSHQGC 267
           +L G  T R F C      +CCRSH GC
Sbjct: 330 LLYGPVTRRLFGCNLSRKKNCCRSHAGC 357


>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
          Length = 189

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -2

Query: 496 TAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 317
           T H+A  + E   ++ + T K   V+  S     + + +L         S +EFP LG+ 
Sbjct: 103 TVHLAALYIEHMTEIIQNTEKPPSVSDASSPGTTSDLDDLETDFTFSDFSLEEFPELGKL 162

Query: 316 AVR 308
           A+R
Sbjct: 163 ALR 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,086,400
Number of Sequences: 59808
Number of extensions: 537848
Number of successful extensions: 1471
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)