Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1458
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 141 6e-34
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 141 6e-34
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 141 6e-34
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 3e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 45 6e-05
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 38 0.011
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 30 2.2
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 30 2.2
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 30 2.2
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.9
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr... 29 5.1
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 6.8
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 6.8
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 6.8
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 9.0
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 141 bits (341), Expect = 6e-34
Identities = 64/84 (76%), Positives = 72/84 (85%)
Frame = -3
Query: 759 IVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 580
+V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K
Sbjct: 243 VVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKE 302
Query: 579 AADFTAQVIVLNHPGQISNGYTPV 508
A F AQVI++NHPGQISNGYTPV
Sbjct: 303 ARTFHAQVIIMNHPGQISNGYTPV 326
Score = 139 bits (337), Expect = 2e-33
Identities = 64/81 (79%), Positives = 71/81 (87%)
Frame = -2
Query: 508 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 329
LDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ P
Sbjct: 327 LDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAP 386
Query: 328 LGRFAVRDMRQTVAVGVIKAV 266
LGRFAVRDMRQTVAVGVIK+V
Sbjct: 387 LGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 141 bits (341), Expect = 6e-34
Identities = 64/84 (76%), Positives = 72/84 (85%)
Frame = -3
Query: 759 IVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 580
+V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K
Sbjct: 277 VVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKE 336
Query: 579 AADFTAQVIVLNHPGQISNGYTPV 508
A F AQVI++NHPGQISNGYTPV
Sbjct: 337 ARTFHAQVIIMNHPGQISNGYTPV 360
Score = 139 bits (337), Expect = 2e-33
Identities = 64/81 (79%), Positives = 71/81 (87%)
Frame = -2
Query: 508 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 329
LDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ P
Sbjct: 361 LDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAP 420
Query: 328 LGRFAVRDMRQTVAVGVIKAV 266
LGRFAVRDMRQTVAVGVIK+V
Sbjct: 421 LGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 141 bits (341), Expect = 6e-34
Identities = 64/84 (76%), Positives = 72/84 (85%)
Frame = -3
Query: 759 IVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 580
+V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K
Sbjct: 277 VVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKE 336
Query: 579 AADFTAQVIVLNHPGQISNGYTPV 508
A F AQVI++NHPGQISNGYTPV
Sbjct: 337 ARTFHAQVIIMNHPGQISNGYTPV 360
Score = 139 bits (337), Expect = 2e-33
Identities = 64/81 (79%), Positives = 71/81 (87%)
Frame = -2
Query: 508 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 329
LDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ P
Sbjct: 361 LDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAP 420
Query: 328 LGRFAVRDMRQTVAVGVIKAV 266
LGRFAVRDMRQTVAVGVIK+V
Sbjct: 421 LGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -2
Query: 454 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 278
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 277 IKAV 266
+K V
Sbjct: 528 LKVV 531
Score = 45.2 bits (102), Expect = 6e-05
Identities = 26/90 (28%), Positives = 44/90 (48%)
Frame = -3
Query: 777 CVETRPIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 598
CV+ +V P +V + + V GDN+ F +K + EL+ G++ S
Sbjct: 363 CVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFII-CSP 421
Query: 597 NNPPKGAADFTAQVIVLNHPGQISNGYTPV 508
++ K F A+V+VL H I++GY+ V
Sbjct: 422 DSLAKTGRVFDAEVLVLEHRSIIASGYSCV 451
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/88 (23%), Positives = 41/88 (46%)
Frame = -2
Query: 529 LKRLHTSLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVE 350
+K L H+ + C F + +++ G+ + P+ I G +A+V + + +E
Sbjct: 501 IKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIE 560
Query: 349 SFQEFPPLGRFAVRDMRQTVAVGVIKAV 266
+F LGR R T+A G+++ V
Sbjct: 561 TFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/88 (23%), Positives = 41/88 (46%)
Frame = -2
Query: 529 LKRLHTSLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVE 350
+K L H+ + C F + +++ G+ + P+ I G +A+V + + +E
Sbjct: 519 IKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIE 578
Query: 349 SFQEFPPLGRFAVRDMRQTVAVGVIKAV 266
+F LGR R T+A G+++ V
Sbjct: 579 TFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -3
Query: 723 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 544
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 543 HPGQISNGY 517
HP I Y
Sbjct: 479 HPTTIKPNY 487
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -3
Query: 735 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 613
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -3
Query: 735 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 613
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -3
Query: 735 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 613
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 126 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 19
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -3
Query: 723 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 544
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 543 H 541
H
Sbjct: 509 H 509
>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
protein F40F12.5 protein.
Length = 1144
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 627 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVWIATLPT 487
RR + A +P G Q + NH G SNG + V +T PT
Sbjct: 679 RRSHDASSYTGSPVVGGVLVPIQSLKHNHSGSSSNGASVVQTSTYPT 725
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 508 LDCHTAHIACKFAEIKEKVDRRTGKSTE 425
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 508 LDCHTAHIACKFAEIKEKVDRRTGKSTE 425
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 508 LDCHTAHIACKFAEIKEKVDRRTGKSTE 425
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 557 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 688
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,426,138
Number of Sequences: 27780
Number of extensions: 397522
Number of successful extensions: 1073
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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