Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1457
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0200 - 23529497-23531938,23532586-23533720,23534272-235344...    29   2.9  
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808...    28   6.8  
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    28   6.8  
11_06_0224 + 21447875-21448944,21449465-21449624                       28   9.0  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   9.0  

>04_04_0200 -
           23529497-23531938,23532586-23533720,23534272-23534463,
           23535527-23535570
          Length = 1270

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +1

Query: 82  ELSADSMSP-SNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKSG 258
           ++S+DS+SP +N+  +D L         D    +   Y +     +  N V    ID S 
Sbjct: 778 DMSSDSLSPENNETADDVLVEGYSVAIVDPCSNEKSAYHAHIPNDVANNEVEEWQIDPSS 837

Query: 259 TPWSTA 276
           T  S+A
Sbjct: 838 TKESSA 843


>12_02_0893 +
           24077634-24078379,24079347-24080412,24080741-24080866,
           24081278-24081384,24081720-24081744
          Length = 689

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 406 PQPIPRMRELPTAMVLTSTLNSSVGSSLPCGRTTGVLQGP 525
           P P P  R+  T    TST++ S G+    G   GV++GP
Sbjct: 360 PPPPPPSRQATTGNSQTSTVSVSNGAVANHGVMAGVMRGP 399


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -1

Query: 346 MMSLKLNGKYFLTISCPLPTHSL*QYSMVFR 254
           MM L + GK    I CP+P+HSL   SMV R
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLR 181


>11_06_0224 + 21447875-21448944,21449465-21449624
          Length = 409

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 152 VRMLLYSLSSRSWLEGLMLSADSSTTPALAASTHIANTTRSFILLGAFS 6
           +R +L +L   +  + LML     T+PA+AA+  + N T  FI + A S
Sbjct: 133 LRFVLLALGGVTGFQALMLQGMKRTSPAIAAA--MPNLTPGFIFVVAAS 179


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 581 ARDRVVYGGNSADSTR--EQWFFQPAKYENDVLFFIYNREFND 703
           A  +  Y G++A   R  + W      Y  DVL F YN+E++D
Sbjct: 39  AGGKTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHD 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,743,723
Number of Sequences: 37544
Number of extensions: 379795
Number of successful extensions: 1144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)