Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1457
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)                   23   8.2  
SB_30275| Best HMM Match : EGF_CA (HMM E-Value=1.3e-13)                28   9.1  

>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -1

Query: 157  HR*GCCCTVCPRGL--G*KGSCCP 92
            H+ G  C VCPRG+    KG C P
Sbjct: 4552 HKNGFLCVVCPRGMYGNSKGECSP 4575


>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
          Length = 290

 Score = 23.4 bits (48), Expect(2) = 8.2
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +3

Query: 309 VKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGSTTNPSNERIAYGDGVDKH 461
           ++ YF     L+M+G    L+  + +L L        S  R+  G G D H
Sbjct: 183 IRYYFACFQELLMSGPANSLLQSHLSLFLPCAGEILGSVYRLLVGHGSDTH 233



 Score = 23.0 bits (47), Expect(2) = 8.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 252 ERNTMEYCYKLWVGNGQDIV 311
           +++   YC+     NGQDIV
Sbjct: 138 QKHLFAYCHNATSNNGQDIV 157


>SB_30275| Best HMM Match : EGF_CA (HMM E-Value=1.3e-13)
          Length = 142

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 150 EDAVVQFVLEVLVRRAHAVRG*FHDAGAGSEHAHCEHNEKFHF 22
           ED  V     + +R+   +R  F DA   +E   CE N   HF
Sbjct: 9   EDYTVNHSAAMAIRQCRCLRWLFQDAELKAEGLQCELNSDTHF 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,208,300
Number of Sequences: 59808
Number of extensions: 431513
Number of successful extensions: 1520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)