Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1457
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    31   0.86 
AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
           class iii (c) protein1 protein.
          Length = 1400

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 136 YNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKSGTP 264
           YN+   GD +  +     YE++ + S + NV NNLI  +SG P
Sbjct: 492 YNADFDGD-EMNLHLPQTYEAKAEASELMNVKNNLITPRSGEP 533


>AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical
           protein Y76A2A.1 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -3

Query: 152 VRMLLYSLSSRSWLEGLMLSADSSTTPALAASTHIANTTRSFILL 18
           V++LL ++S R     L  SA S+ T   A S HIA  ++  ILL
Sbjct: 118 VQLLLCNISDRDIFVKLRCSAASNITALPAGSGHIAPKSQMRILL 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,497,162
Number of Sequences: 27780
Number of extensions: 319317
Number of successful extensions: 1062
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)