Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1457
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    30   1.4  
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    30   1.9  
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    29   2.4  
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    29   2.4  
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR...    29   2.4  
At5g66720.2 68418.m08411 5-azacytidine resistance protein -relat...    28   7.5  
At5g66720.1 68418.m08410 5-azacytidine resistance protein -relat...    28   7.5  
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f...    28   7.5  
At4g21550.1 68417.m03113 transcriptional factor B3 family protei...    27   9.9  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 267 EYCYKLWVGNGQDIVKKYFPLSF 335
           EY  KL + +G D   KYFPL+F
Sbjct: 396 EYQLKLMIASGVDAANKYFPLAF 418


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +1

Query: 55  VLAASAGVVELSADSMSPSNQDLEDKLYNSILTGDYD 165
           VLA + G  ELS    SP+ Q++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSP---SPAEQEIESFLYNAINMGFFD 103


>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +1

Query: 100 MSPSNQDLE-DKLY--NSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKSGTPWS 270
           M   NQ  E +KL+  NS L+  Y  ++  S ++E+Q +  + QNV    ++DK  T  +
Sbjct: 288 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRTEQA 347

Query: 271 TATSCG 288
            + S G
Sbjct: 348 GSFSRG 353


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +1

Query: 100 MSPSNQDLE-DKLY--NSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKSGTPWS 270
           M   NQ  E +KL+  NS L+  Y  ++  S ++E+Q +  + QNV    ++DK  T  +
Sbjct: 289 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRTEQA 348

Query: 271 TATSCG 288
            + S G
Sbjct: 349 GSFSRG 354


>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1103

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -3

Query: 134  SLSSRSWLEGLMLSADSSTTPALAASTHIAN 42
            S+S   WLEG  L  DS  T    A  HIAN
Sbjct: 1065 SVSFNPWLEGEALCVDSMITEQQDAQIHIAN 1095


>At5g66720.2 68418.m08411 5-azacytidine resistance protein -related
           contains weak similarity to 5-azacytidine resistance
           protein azr1 (Swiss-Prot:Q09189) [Schizosaccharomyces
           pombe]
          Length = 411

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 88  SADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKSGTPW 267
           S D +      + D LYN  +TG   S+VR  L+ +   Q  I +      +  K  +P+
Sbjct: 324 SGDVIVAGTDGVYDNLYNEEITGVVVSSVRAGLDPKGTAQ-KIAELARQRAVDKKRQSPF 382

Query: 268 STA 276
           +TA
Sbjct: 383 ATA 385


>At5g66720.1 68418.m08410 5-azacytidine resistance protein -related
           contains weak similarity to 5-azacytidine resistance
           protein azr1 (Swiss-Prot:Q09189) [Schizosaccharomyces
           pombe]
          Length = 414

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 88  SADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKSGTPW 267
           S D +      + D LYN  +TG   S+VR  L+ +   Q  I +      +  K  +P+
Sbjct: 327 SGDVIVAGTDGVYDNLYNEEITGVVVSSVRAGLDPKGTAQ-KIAELARQRAVDKKRQSPF 385

Query: 268 STA 276
           +TA
Sbjct: 386 ATA 388


>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 16 (UBP16)
           [Arabidopsis thaliana] GI:11993477; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 731

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -2

Query: 717 SSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSALLPPYTTRSRALQLQVDVLIFKYWL 538
           SSS   L S+   K + S +  +G K     V+    PP +++       +D + F Y L
Sbjct: 256 SSSTLLLPSKANSKPKVSQASSSGLKTSVQKVVQHFRPPQSSKKSQPSSSIDEMSFSYEL 315

Query: 537 YLVLW 523
           ++ L+
Sbjct: 316 FVKLY 320


>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
           low similarity to SP|Q01593 Abscisic acid-insensitive
           protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
           protein homolog {Oryza sativa}; contains Pfam profile
           PF02362: B3 DNA binding domain
          Length = 721

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -1

Query: 214 CCPGLGSRIPSSYVQHCRSHR*GCCCTVC---PRGLG*K-GSCC 95
           C    G  I  +  +H R HR GC C +C   P G+G K   CC
Sbjct: 545 CTEVEGLLISPTTTKHPR-HRDGCTCIICIQSPSGIGPKHDRCC 587


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,593,292
Number of Sequences: 28952
Number of extensions: 287499
Number of successful extensions: 758
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)